Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26320 535 / 0 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT3G26330 533 / 0 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT3G26300 531 / 0 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT5G57260 529 / 0 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) AT3G26310 522 / 0 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT3G26180 502 / 6e-175 CYP71B20 "cytochrome P450, family 71, subfamily B, polypeptide 20", cytochrome P450, family 71, subfamily B, polypeptide 20 (.1.2) AT3G26290 499 / 1e-173 CYP71B26 "cytochrome P450, family 71, subfamily B, polypeptide 26", cytochrome P450, family 71, subfamily B, polypeptide 26 (.1) AT3G26170 495 / 2e-172 CYP71B19 "cytochrome P450, family 71, subfamily B, polypeptide 19", cytochrome P450, family 71, subfamily B, polypeptide 19 (.1) AT1G13110 488 / 1e-169 CYP71B7 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) AT2G02580 485 / 1e-168 CYP71B9 "cytochrome P450, family 71, subfamily B, polypeptide 9", cytochrome P450, family 71, subfamily B, polypeptide 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G184900 [exp] 964 / 0 AT3G26320 529 / 0.0 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Potri.008G184400 [exp] 962 / 0 AT3G26320 535 / 0.0 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Potri.010G049200 [exp] 734 / 0 AT3G26320 435 / 1e-149 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Potri.002G025300 [exp] 466 / 9e-161 AT4G31500 519 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025425 [exp] 464 / 4e-160 AT4G31500 520 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025350 [exp] 459 / 3e-158 AT4G31500 514 / 7e-180 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025800 [exp] 448 / 1e-153 AT4G31500 490 / 3e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025500 [exp] 448 / 1e-153 AT4G31500 502 / 6e-175 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G026500 [exp] 446 / 6e-153 AT4G31500 489 / 8e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030189 [exp] 595 / 0 AT5G57260 487 / 3e-169 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) Lus10023140 [exp] 440 / 6e-151 AT3G26300 457 / 8e-158 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10012399 [exp] 431 / 5e-147 AT4G31500 516 / 2e-180 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10024315 [exp] 431 / 7e-147 AT4G31500 540 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10033172 [exp] 424 / 3e-144 AT4G31500 540 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10004517 [exp] 422 / 9e-144 AT4G31500 489 / 6e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10016601 [exp] 422 / 3e-143 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10034502 [exp] 417 / 1e-142 AT4G31500 477 / 1e-166 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10017961 [exp] 420 / 2e-142 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10010066 [exp] 412 / 1e-139 AT4G31500 487 / 3e-169 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.008G184000.1 pacid=42806281 polypeptide=Potri.008G184000.1.p locus=Potri.008G184000 ID=Potri.008G184000.1.v4.1 annot-version=v4.1 ATGGCTCCGTATGTTGTACCTTTATGGCTTCCTCTTATCTTACTTCTGGCACTACTGCTTCTATTTATGAAAAAGATGGAAGTTAAGACACAAAGCGAGC AGCTTCTTCCTCCAAGCCCTCCTAAGCTTCCAATTTTAGGCAACTTGCACCAACTTGGATCACTGCCTCACCAATCTCTGTGGCAACTCTCCAAGAAATA TGGCCCTGTCATGCTAATTCGACTTGGTCGAATACCAACTGTCGTAATCTCCTCTGCTGAGGCAGCAAGAGAGGTCTTAAAAGTTCATGATGTTGCCTTT TGCAGTAGACCTCTTTTAGCTGGGACTGGGAGACTCACTTACAATTATCTAGACATAGCATTTTCACCTTATAGTGATCACTGGAGAAACATGAGAAAAA TTCTTACTTTGGAGCTATTCAGCTTGAAAAGGGTGCAGTCTTTCCGGTTCATCAGGGAAGAAGAAGTTAGCTTGCTGGTCAATTTTATCTCTGAGTCATC AGCTTTAGCAGCACCTGTTGATCTTACTCAGAAATTATATGCTCTCGTTGCGAATATAACATTCAGGATGGCTTATGGATTCAATTATCGAGGGACTAGC TTTGATCGAGATAAATTTCATGAAGTGGTTCATGACACCGTGGCTGTGGTGGGAAGCATCTCAGCAGATGAATCCATCCCGTATTTAGGGTGGATTGTGG ATCGGCTTACTGGTCATCGTGCAAGGACTGAGAGAGTTTTCCATGAAGTAGATACTTTCTTTCAGCATTTAATTGATAATCATCTTAAACCTGGAAGGAT AAAGGAGCACGATGACATGGTAGATGTTCTGCTGAGAATAGAGAAGGAGCAGACTGAACTTGGTGCATCTCAGTTCACAAAGGATAATATCAAGGCAATC CTCCTGAATTTATTTCTGGGAGGAGTAGACACTAGTTCACTGACAGTGAATTGGGCAATGGCAGAACTTGTTAGGAATCCAAGAGTGATGAAGAAAGTGC AGGATGAAGTTAGGAAATGTGTTGGAAATAAGGGAAGAGTTACTGAAAGCGACATCGATCAACTTGAGTATCTCCGGATGGTAATAAAAGAAACTCTGAG ACTGCACCCTCCTGCCCCACTACTTATCCCAAGAGAAACCATGTCTCACTGTAAAGTCAGTGGTCATAATATCTATCCGAAGATGCTGGTCCAAATTAAT GTCTGGGCAATTGGACGTGACCCCACGTACTGGAAGGATCCTGAAGAGTTTTTCCCTGAAAGATTCCTTGATAGCTCCATTGACTATAAAGGACAAAGTT TTGAGTACTTGCCATTTGGATCTGGTCGAAGAATTTGTCCTGGGATGCATATGGGATTTATAACAATGGAGATTATACTTGCAAATCTCTTGTATTGTTT TGATTGGGTTTATCCCGATGGGATGAAGAAGGAAGATATCAACATGGAAGAGAAAGCTGGTGTTAGTCTTACTACCTCTAAGAAGACACCTCTCATTCTT GTACCAGTCAACTACCTTCAGTGA
AA sequence Show only first row Show all	>Potri.008G184000.1 pacid=42806281 polypeptide=Potri.008G184000.1.p locus=Potri.008G184000 ID=Potri.008G184000.1.v4.1 annot-version=v4.1 MAPYVVPLWLPLILLLALLLLFMKKMEVKTQSEQLLPPSPPKLPILGNLHQLGSLPHQSLWQLSKKYGPVMLIRLGRIPTVVISSAEAAREVLKVHDVAF CSRPLLAGTGRLTYNYLDIAFSPYSDHWRNMRKILTLELFSLKRVQSFRFIREEEVSLLVNFISESSALAAPVDLTQKLYALVANITFRMAYGFNYRGTS FDRDKFHEVVHDTVAVVGSISADESIPYLGWIVDRLTGHRARTERVFHEVDTFFQHLIDNHLKPGRIKEHDDMVDVLLRIEKEQTELGASQFTKDNIKAI LLNLFLGGVDTSSLTVNWAMAELVRNPRVMKKVQDEVRKCVGNKGRVTESDIDQLEYLRMVIKETLRLHPPAPLLIPRETMSHCKVSGHNIYPKMLVQIN VWAIGRDPTYWKDPEEFFPERFLDSSIDYKGQSFEYLPFGSGRRICPGMHMGFITMEIILANLLYCFDWVYPDGMKKEDINMEEKAGVSLTTSKKTPLIL VPVNYLQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26320		CYP71B36	"cytochrome P450, family 71, s...		Potri.008G184000 [exp]	0	1
AT3G26320		CYP71B36	"cytochrome P450, family 71, s...		Potri.008G184900 [exp]	1.00	0.9264
AT3G26320		CYP71B36	"cytochrome P450, family 71, s...		Potri.008G184400 [exp]	3.46	0.8879	CYP71B40-1
AT1G02930		ATGST1, GST1, E...	EARLY RESPONSIVE TO DEHYDRATIO...		Potri.002G207286 [exp]	5.91	0.8240
AT5G45540			Protein of unknown function (D...		Potri.015G114101 [exp]	7.34	0.8419
AT1G67560		ATLOX6, LOX6	Arabidopsis thaliana lipoxygen...		Potri.010G057100 [exp]	7.54	0.7610
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Potri.002G039000 [exp]	8.06	0.7708	ERF28
AT3G48770			DNA binding;ATP binding (.1)		Potri.015G102401 [exp]	11.61	0.7438
AT5G38530		TSBtype2	tryptophan synthase beta type ...		Potri.017G109600 [exp]	12.96	0.8061
AT5G35550	MYB	ATTT2, TT2, AtM...	TRANSPARENT TESTA 2, MYB DOMAI...		Potri.006G221500 [exp]	14.14	0.7999	MYB183
AT3G50150			Plant protein of unknown funct...		Potri.019G108400 [exp]	14.73	0.8011

Compare expression of checked genes

Potri.008G184000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.