Plant FIBer expression Database

Potri.008G184600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G24560 301 / 2e-97 unknown protein
AT3G49055 71 / 2e-13 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G183800
[exp]
467 / 6e-162 AT1G24560 691 / 0.0 unknown protein
Potri.010G049400
[exp]
413 / 9e-141 AT1G24560 642 / 0.0 unknown protein
Potri.015G146100
[exp]
104 / 1e-24 AT3G49055 191 / 1e-54 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025844
[exp]
351 / 2e-116 AT1G24560 750 / 0.0 unknown protein
Lus10038257
[exp]
349 / 1e-115 AT1G24560 736 / 0.0 unknown protein
Lus10013022
[exp]
289 / 7e-93 AT1G24560 624 / 0.0 unknown protein
Lus10029143
[exp]
289 / 1e-92 AT1G24560 613 / 0.0 unknown protein
Lus10027489
[exp]
93 / 7e-21 AT3G49055 244 / 3e-75 unknown protein
Lus10039244
[exp]
51 / 1e-07 AT3G49055 89 / 2e-21 unknown protein
PFAM info
Representative CDS sequence
>Potri.008G184600.1 pacid=42805832 polypeptide=Potri.008G184600.1.p locus=Potri.008G184600 ID=Potri.008G184600.1.v4.1 annot-version=v4.1
ATGCTGAGAGCCATCTCAACTTTAGTAGAGGAGAAGAATCATGAAGTGAAGAATTTGAATGGAACAGTGGGTCGATTGATGAAGGAGAAAGAACACATTG
GTACTTTACTTAGGAGTGCCTTGTCGAAGAGGATGAAATTAGATCCATCCTCCAAAACAAATGAGTTGTTTCAAGTTGCTGAAAATGGTTTAAGAGAGGC
TGGGATTGATTTCAAATTCAGTAAAGTCCTTGGTGATGGTAAGGTATCTGGTGATAAAGGCGGCTCACTGGAAACGGAGAGTGATGAAATAAACACTCTA
GCCGGTGCTTTGGAGAACATCGTTAAGGCATCTCAGTTTGAGATCATTGAGCTGCAGCATTCTGTGGAGGAACTAAGGGCAGAGTCAAGTTTACTTAAAG
AGCATCTAGAGATTCAAGCCAAGGAACTAAGTCATAGACTGCGCAGGATAGAGGAGCTTGTAGAGAAGGAGAGAGTGGCAAATGAAAGCGTTGAAGGACT
TATGACAGACATTGCTGCTGCAGAAGAAGAAATTACAAGGTGGAAAGTAGCAGCTGAGCAAGAGGCTGCTGCGGGTAGAGCAGTTGAACAAGAGTTTGTG
GCTCAGCTGTCGGCAGTTAAACAAGAACTTGAAGAGGCAAGGCAAGCCATATTAGAATCAGAGAAGAAGTTAAAATTCAAAGAAGAAACAGCAGCTGCTG
CCATGGCAGCAAGAGAGGCTGCTGAGAAGTCATTGAGTTTGGCTGACATGAGGGCGTCTAGGCTGAGGGATAGGATAGAGGAGCTCAGCCATCAGCTGGA
AGAGCTTGAAACTCGAGAAGATTTGAGGGCCCGAAATGGGCCTAGATATGTATGTTGGCCTTGGCAGTGGCTTGGGCTGGACTTTGGAGGCTACCGCAAT
ACCGAGACACAACTACAGAGTTCAAATGAAATGGAGCTTTCCGAACCCCTCCTATGA
AA sequence
>Potri.008G184600.1 pacid=42805832 polypeptide=Potri.008G184600.1.p locus=Potri.008G184600 ID=Potri.008G184600.1.v4.1 annot-version=v4.1
MLRAISTLVEEKNHEVKNLNGTVGRLMKEKEHIGTLLRSALSKRMKLDPSSKTNELFQVAENGLREAGIDFKFSKVLGDGKVSGDKGGSLETESDEINTL
AGALENIVKASQFEIIELQHSVEELRAESSLLKEHLEIQAKELSHRLRRIEELVEKERVANESVEGLMTDIAAAEEEITRWKVAAEQEAAAGRAVEQEFV
AQLSAVKQELEEARQAILESEKKLKFKEETAAAAMAAREAAEKSLSLADMRASRLRDRIEELSHQLEELETREDLRARNGPRYVCWPWQWLGLDFGGYRN
TETQLQSSNEMELSEPLL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G24560 unknown protein Potri.008G184600
[exp]
0 1
AT1G75510 Transcription initiation facto... Potri.002G028900
[exp]
1.00 0.8893
AT5G13340 unknown protein Potri.019G001900
[exp]
2.00 0.8721
AT3G23410 ATFAO3 ARABIDOPSIS FATTY ALCOHOL OXID... Potri.010G069100
[exp]
11.48 0.8237
AT2G42040 unknown protein Potri.006G193500
[exp]
12.04 0.8592
AT5G02440 unknown protein Potri.009G030100
[exp]
14.69 0.8625
AT4G17100 unknown protein Potri.003G085600
[exp]
31.30 0.8219
AT3G53030 SRPK4 ser/arg-rich protein kinase 4 ... Potri.006G117800
[exp]
32.06 0.7618
AT3G15150 HPY2, ATMMS21 HIGH PLOIDY2, A. THALIANA METH... Potri.011G141200
[exp]
32.86 0.8297
AT2G21870 MGP1 MALE GAMETOPHYTE DEFECTIVE 1, ... Potri.005G085500
[exp]
37.54 0.8590
Potri.016G091300
[exp]
38.96 0.8308

Potri.008G184600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.