Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13040 628 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G63070 240 / 3e-72 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G63130 239 / 3e-71 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 238 / 3e-71 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63080 237 / 7e-71 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12700 239 / 1e-70 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) AT1G62590 237 / 2e-70 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G63330 234 / 2e-70 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G05670 236 / 3e-69 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G62670 233 / 6e-69 RPF2 rna processing factor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G050300 [exp] 245 / 8e-74 AT1G12700 466 / 5e-156 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046100 [exp] 245 / 1e-73 AT1G12700 512 / 1e-173 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G074500 [exp] 243 / 2e-73 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G034200 [exp] 241 / 4e-72 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034400 [exp] 241 / 5e-72 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G032600 [exp] 240 / 6e-72 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G045000 [exp] 239 / 1e-71 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050400 [exp] 239 / 1e-71 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050500 [exp] 239 / 1e-71 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036129 [exp] 667 / 0 AT1G13040 573 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10011646 [exp] 580 / 0 AT1G13040 503 / 1e-175 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10012139 [exp] 239 / 2e-69 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010410 [exp] 237 / 8e-69 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 231 / 3e-67 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 224 / 4e-65 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 223 / 1e-64 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013283 [exp] 220 / 4e-64 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10010407 [exp] 224 / 5e-64 AT5G59900 981 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 222 / 6e-64 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.008G185000.1 pacid=42807347 polypeptide=Potri.008G185000.1.p locus=Potri.008G185000 ID=Potri.008G185000.1.v4.1 annot-version=v4.1 ATGTATCAACCTCTGGGCGTACACCGCCTCATATACCGTACTCGCATTGCCAGCTACGTCAAAGCTGGTCTCATCGATTATGCAGTCAAGGTGTTCGACG AAATGACTTTGTCAGAATGTCGTGTTTTTGGCATCGATTATAACCGATTCATTGGCGTTTTGATTCGCCACTCTCGCTTCGATTTAGCCCATCACTACTA TTCTAAAATGGCCCCTCTTGGGTTCTCCTTGTCTTCCTTTACTTACTCTCGTTTCATTTCAGGTTTGTGCCAGACAAAAGAGTTTACCTTTATTGATAAT TTGTTAAAAGACATGGAGAAACTTCATTGCGTGCCTGATATTTGGGCTTTTAATATCTATTTGAATCTTTTGTTTCGCGAGAATAGGGAAGAGTCAGCAT TGGAGGTGTTTGGGAGAATGGTTGAGAGAGGGAGAGAGCCTGATGTAGTGACATTTACTATTATTATTGATGGTTTGTGTAAAATGAAGAAATTTGATGC TGCCGTTCAGTTTTGGCTTAATATGTTAGATAAAGGGATTAGGCCGGATAACAAGGCTTGTGTGGCGCTTGCTGTTGGCTTGTGCGACGGGGGGCAAGTG GATTTAGCTTATGAGCTTATAATTGGTGTAATTAGTGGTGGTCTGTCAGAGGTTAGTACATTGGTTTATAATGCATTGATTAGTGGGTTTTGTAGAGCAG GTAGGATTGATAAGGCGTTGGCTATGGTGTCTTTTATGAGTAGGACTGGGTGCAAGCCGGATTTGGTTACATACAACGTGTTGTTGAATTATTGTTGCAA CGAGTTTATGTTTGAGGAGGCGGTGAAGTTGTTGAAGAAGATGGAGTGTAGTGCGATAGAACCTGATGTATATAGCTATAATCAACTTCTCAAGGCACAT TGTAAAGCTAATCACCCGGATAAAGCTTATCTGTTTATGGTGACGAAGATGGTGCCAAAAGGTTTTTGTGATGTCGTTTCGTACAATACTATTATCAAAG CATTTTGCAGTATTAGTAATAACAGAAGGGCCTATAAGCTGTTTGAGGAAATGGGACGAAAGGGGATTGCCCCAGATGTGGTAACGTTCACAATACTTAT AAAAGCTTTTCTTAGAGAAGGTAATTCTGATATGGCAAAGAAGCTTCTTGATCTGATGGCAGGAATGGGCCTTTTGCCTGATCGTATATTTTATACGACA ATCATTGATCACCACTGCAAGAGTGGGAAAGTTGAGATGGCTCACAGCATTTTTTGTGATATGGTAGAAAAAGGTATCACTCCTGATGTGGTTTCATATA ATGCCCTTATAAATGGATTTTGTAAATCTTTGAGAGTAGGTGAAGTTATGCATCTATATGAGCAAATGCTGCAAAGAGGATCGTTTCCTGATGAAGTGAC TTATAAGTTGATCATTGGAGCTCTTGTACGGGAAAATAAGCTTTCAGATGCTTGTAGGGTGTGGGATCAGATGATGGAGAGGGGCCTCACTCTTGACAGG GGTATATCTGAAATGCTGATCAATGCCATCCAGTCATGA
AA sequence Show only first row Show all	>Potri.008G185000.1 pacid=42807347 polypeptide=Potri.008G185000.1.p locus=Potri.008G185000 ID=Potri.008G185000.1.v4.1 annot-version=v4.1 MYQPLGVHRLIYRTRIASYVKAGLIDYAVKVFDEMTLSECRVFGIDYNRFIGVLIRHSRFDLAHHYYSKMAPLGFSLSSFTYSRFISGLCQTKEFTFIDN LLKDMEKLHCVPDIWAFNIYLNLLFRENREESALEVFGRMVERGREPDVVTFTIIIDGLCKMKKFDAAVQFWLNMLDKGIRPDNKACVALAVGLCDGGQV DLAYELIIGVISGGLSEVSTLVYNALISGFCRAGRIDKALAMVSFMSRTGCKPDLVTYNVLLNYCCNEFMFEEAVKLLKKMECSAIEPDVYSYNQLLKAH CKANHPDKAYLFMVTKMVPKGFCDVVSYNTIIKAFCSISNNRRAYKLFEEMGRKGIAPDVVTFTILIKAFLREGNSDMAKKLLDLMAGMGLLPDRIFYTT IIDHHCKSGKVEMAHSIFCDMVEKGITPDVVSYNALINGFCKSLRVGEVMHLYEQMLQRGSFPDEVTYKLIIGALVRENKLSDACRVWDQMMERGLTLDR GISEMLINAIQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13040			Pentatricopeptide repeat (PPR-...		Potri.008G185000 [exp]	0	1
AT5G46190			RNA-binding KH domain-containi...		Potri.011G082500 [exp]	1.73	0.8989
AT2G40360			Transducin/WD40 repeat-like su...		Potri.003G009600 [exp]	3.16	0.8900
AT3G10650		AtNUP1	unknown protein		Potri.008G014800 [exp]	5.29	0.8801
AT2G22010		RKP	related to KPC1 (.1.2)		Potri.005G083800 [exp]	5.47	0.8757
AT4G39420			unknown protein		Potri.007G078650 [exp]	6.48	0.8719
AT3G55200		AtSAP130a	Arabidopsis thaliana spliceoso...		Potri.010G212100 [exp]	7.07	0.8635
AT2G18900			Transducin/WD40 repeat-like su...		Potri.006G166500 [exp]	7.74	0.8587
AT5G13230			Tetratricopeptide repeat (TPR)...		Potri.001G062566 [exp]	9.38	0.8615
AT2G40770			zinc ion binding;DNA binding;h...		Potri.019G060900 [exp]	9.79	0.8829
AT4G13750		EMB2597, NOV	NO VEIN, EMBRYO DEFECTIVE 2597...		Potri.001G317200 [exp]	9.89	0.8682

Compare expression of checked genes

Potri.008G185000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.