Plant FIBer expression Database

Potri.008G185100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G13030 200 / 1e-55 sphere organelles protein-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G048700
[exp]
949 / 0 AT1G13030 194 / 1e-53 sphere organelles protein-related (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006228
[exp]
207 / 4e-58 AT1G13030 320 / 4e-101 sphere organelles protein-related (.1)
Lus10036876
[exp]
203 / 1e-56 AT1G13030 323 / 4e-102 sphere organelles protein-related (.1)
Lus10011406
[exp]
139 / 5e-34 AT3G26350 209 / 5e-60 unknown protein
Lus10006465
[exp]
107 / 1e-25 AT1G13030 91 / 3e-20 sphere organelles protein-related (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF15862 Coilin_N Coilin N-terminus
Representative CDS sequence
>Potri.008G185100.2 pacid=42807431 polypeptide=Potri.008G185100.2.p locus=Potri.008G185100 ID=Potri.008G185100.2.v4.1 annot-version=v4.1
ATGGACACGGTGAGGCTCCGTTTAGTGCTCGACAACGCTTTGAATACGACGACGGAAGGACTTAGAAAGTGCTGGATTCTTTTAAAGCCCCAACACAAAA
CCATCTCCGATCTCTCCTCCCATATCTTCCACGTTTTTGACCTCCACAATGCATGCCCTCACGGCCTCCTCCTCTCCATGGAAGGGTTTGCATTACCGCC
TTTCGAGTCTACAAGTATTTTGAAGGACAAAGATATTATCAGAGTGAAAAAGAAAGGCAGCACGTCTACTGAAATTATCAAGATAGATGATGGGCTGAAT
GATTCCTTGAATGTGGTGGAGATAATTGACAAGCCACCGGTAACTAAAGGCACGAATCTGCTTGCAAATGAGGAATTTGAAAAGCAATCTGATGGCTACG
AAACTGAACCAGAGGAGGATGTGGCTGAAGAGGTGGAGGATGTGGAAAATAGTCCAGAGGTGAAAACAGTTTCCAAGAAGAGAAAGGCATCGAAGGATCT
TCGCTGCCCAAAGAGGAAGAAAACCAAATCTGCTAGTGCTGGAAAATGTCTAGAAGTTCCAGAAAATGTAGGGACTAATGTCTGTGCAGAGCAGAATGGA
ACTTTGAGCATTGTTAACGCTGATAAAAAAAGTAACAAGAGTAGAAAATCCACGCCTGACACGAAGAAGAGGAAGAAAAATAAATCTGCTATTGCTGAAA
AATGTCTGGAAGTTTCAGAAAATGCAGGGACAAGTGTCTGCACAGGACAGAATGGCACTTTGACCATTTTGAAATCAGATGAAAGAAGTAGCAAGAGGAC
AGAAGCTACATGCAATGCAAAGAAGTCTTGCCAGCCTGAACAAAATGGCAATGGGAGTGTGGATGCATTACATACACTTTCTGGATCTAAAAAGTTCCCT
AGTAGAAGTGCTAGGCGTAAAAAGGCCAAGAGGCAATGGTTAAAGGAACAACTCAAAGCTGAAAAGAAAGAGCAAAATCAGATGCAGTTATTTTCAAAAA
TCAATCAGCAATCGTCTAAAAGGGATAATCAGAATGTTGCTGAGAAATCACCTGAATTGGGAAGTCACAAACTTTCAGAAGAAAAACTCAGGGAAGACAA
TCAATTGGGAGAGCAAGATAGTGATGTAGAAGGTGATGTTGTTCCCATAGTGATAAGGCCGGGACATATTCGCTTTGAGCCACTCAAGAAAGGGGGTGAT
GATCAGGCTGTGCTGCAAAATCACATTCCCACTGAATCATTTCACTGGAATGGGATAACAAGCAAAAAGAAGGGTCAAAAGTGGGGTAAAGAGAAAGCAG
TGTCATGTAAAAGAAATGATTATAACAATTTCAGGAAAGAGTCTTCCAGCAGTCTTTCTATTGAAGAACAGACACCTGTATATGATTGTACCAACTTTGA
AGAGCTTCCACTCTATGCTAGCTTGCCAAAGGAAGGTGATGTAATTGCTTATCGTGTAGTTGAGCTGTCATTGTCCTGGACCCCTGAGCTCTCATCCTAC
CGTGTTGGAAAGATATCAAAATATGATCTCGAATCCAATATAGTTATACTGGTCCAAGTACCAGGATATCCAGTAGTTCCTGAGAAGATAGATGATGAGG
CATCTGCTGCACTACCAGAAACATCCCCTTATGGGGAAGATGGATCTTTAGAGATAAAGTTTTCAACACTTCATGAGGTTCGCCTTGTCCGCCATGGTAA
TCTAGAGTCAGCAAAATCCATTGCTAGTGGATCTAATGAAGTCCATGTCAGGGATCAAGATTCTGGAACAGGTTTTAGTCCCAACAATAACCATGAAGCT
AATACTTCCGCTCAAGAAAATGAAAAACGTAATCCATGGGAAGAAATTAACCAGGCTTTGACAGCAAAGAAGGAACTGCTGTCTCAGGAGGATGGTTGGA
AAAAAACTGAGAGTTCAAGCAGGAGCCCATGGTCCTATAAGGCCTTGAGAGGCAGCTCGCTGGGTCGAACAATGGCTTTATTAAGAGCACAAAACGAAAT
ATGA
AA sequence
>Potri.008G185100.2 pacid=42807431 polypeptide=Potri.008G185100.2.p locus=Potri.008G185100 ID=Potri.008G185100.2.v4.1 annot-version=v4.1
MDTVRLRLVLDNALNTTTEGLRKCWILLKPQHKTISDLSSHIFHVFDLHNACPHGLLLSMEGFALPPFESTSILKDKDIIRVKKKGSTSTEIIKIDDGLN
DSLNVVEIIDKPPVTKGTNLLANEEFEKQSDGYETEPEEDVAEEVEDVENSPEVKTVSKKRKASKDLRCPKRKKTKSASAGKCLEVPENVGTNVCAEQNG
TLSIVNADKKSNKSRKSTPDTKKRKKNKSAIAEKCLEVSENAGTSVCTGQNGTLTILKSDERSSKRTEATCNAKKSCQPEQNGNGSVDALHTLSGSKKFP
SRSARRKKAKRQWLKEQLKAEKKEQNQMQLFSKINQQSSKRDNQNVAEKSPELGSHKLSEEKLREDNQLGEQDSDVEGDVVPIVIRPGHIRFEPLKKGGD
DQAVLQNHIPTESFHWNGITSKKKGQKWGKEKAVSCKRNDYNNFRKESSSSLSIEEQTPVYDCTNFEELPLYASLPKEGDVIAYRVVELSLSWTPELSSY
RVGKISKYDLESNIVILVQVPGYPVVPEKIDDEASAALPETSPYGEDGSLEIKFSTLHEVRLVRHGNLESAKSIASGSNEVHVRDQDSGTGFSPNNNHEA
NTSAQENEKRNPWEEINQALTAKKELLSQEDGWKKTESSSRSPWSYKALRGSSLGRTMALLRAQNEI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G13030 sphere organelles protein-rela... Potri.008G185100
[exp]
0 1
AT3G14120 unknown protein Potri.001G165900
[exp]
1.73 0.8194
AT3G60400 Mitochondrial transcription te... Potri.014G044900
[exp]
2.23 0.8420
AT1G72440 SWA2, EDA25 SLOW WALKER2, embryo sac devel... Potri.001G164100
[exp]
5.29 0.8190
AT3G01610 CDC48C, EMB1354 embryo defective 1354, cell di... Potri.013G151600
[exp]
6.00 0.8089 CDC48.4
AT5G06810 Mitochondrial transcription te... Potri.016G048200
[exp]
6.32 0.8279
AT3G08820 Pentatricopeptide repeat (PPR)... Potri.016G128900
[exp]
8.36 0.8181
AT1G69290 Pentatricopeptide repeat (PPR)... Potri.008G095800
[exp]
8.48 0.8058
AT1G65660 SMP1 SWELLMAP 1, Pre-mRNA splicing ... Potri.015G048200
[exp]
8.94 0.7862
AT5G15280 Pentatricopeptide repeat (PPR)... Potri.017G086000
[exp]
10.39 0.7804
AT5G50990 Tetratricopeptide repeat (TPR)... Potri.012G109300
[exp]
10.95 0.7735

Potri.008G185100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.