Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26400 324 / 1e-104 EIF4B1 eukaryotic translation initiation factor 4B1 (.1) AT1G13020 306 / 1e-97 EIF4B2 eukaryotic initiation factor 4B2 (.1) AT4G38710 52 / 6e-07 glycine-rich protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G048200 [exp] 598 / 0 AT3G26400 349 / 1e-114 eukaryotic translation initiation factor 4B1 (.1) Potri.009G130200 [exp] 67 / 1e-11 AT4G38710 192 / 1e-56 glycine-rich protein (.1.2) Potri.014G123100 [exp] 47 / 1e-05 AT3G26400 55 / 3e-08 eukaryotic translation initiation factor 4B1 (.1) Potri.002G198700 [exp] 46 / 4e-05 AT3G26400 50 / 1e-06 eukaryotic translation initiation factor 4B1 (.1) Potri.004G169100 [exp] 44 / 0.0003 AT4G38710 149 / 1e-40 glycine-rich protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036874 [exp] 336 / 2e-109 AT3G26400 355 / 4e-117 eukaryotic translation initiation factor 4B1 (.1) Lus10011412 [exp] 323 / 4e-104 AT3G26400 387 / 3e-129 eukaryotic translation initiation factor 4B1 (.1) Lus10006469 [exp] 184 / 2e-53 AT3G26400 205 / 1e-61 eukaryotic translation initiation factor 4B1 (.1) Lus10006224 [exp] 152 / 4e-39 AT3G26430 342 / 5e-111 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10012166 [exp] 49 / 4e-06 AT4G38710 159 / 2e-44 glycine-rich protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06273 [poplar] [flax] eIF-4B Plant specific eukaryotic initiation factor 4B
Representative CDS sequence Show only first row Show all	>Potri.008G185400.1 pacid=42808676 polypeptide=Potri.008G185400.1.p locus=Potri.008G185400 ID=Potri.008G185400.1.v4.1 annot-version=v4.1 ATGTCAAAACAGAGGAGCAAAATCGGCGCATGGGCAGCCGATGCGGAGCAAGCCGAGGAAGAGGAGCGTGCAGCCGCTGCAGCTGCCGTTTCTCAAAGTT CCCCTAATCTGAAAGAAGTTGCCGGAACCGCTAAGACTAAAAAGAAGAAAATGTCTCTAAATGAATTCCACTCCACGCCCATCGGCGGCGGTGTTGAATC CAGAGGATTGACTCCGAACGTGATGTTCGGCCTCCCTACCGGTCCAAAAGAGCGTTCCGATGAAGAAATGCAGTATGGACGCCTCGGCGGTGGATTTTCC AATTATGGTCGAACTGGGCCGCAGCCTGGACATATGCGTGATCGTGAAGACAGCGATGGATCTTGGGGAGGTGGTGGTGGTAGAAGGCAATTTGGTGGCG GTTTTGATGATGAACGAAGAGGTCCATCTTCTTCTAGGGTTTCTGATTACGATCAGCCTTCGCGTGCTGATGAGGTTGATAATTGGGCAATGGATAAGAA ACCACTGCCTTCCTATGATTCTGGACGACAAAGCCGTTACGGTTCACTCGGCGGCGGCGGAGGAGGCGGCGGAGGTTTTGGAGGTGGTTCTAGAGCTGAT GAAGTTGATAATTGGGCGGTTGGTAAAAAGCCGTTGCCTACTCCATCTTCGACTTTTGGTTCGGGTTTTCGTGATTCTGGGCCGGATCCTGATCGCCAGA GCAGAGGAGGATACCGTGAGCCGGAGAGGGAGAGGCCTAGATTGGTTTTCGATTCACCAAGAGGTGAAGTTGGAGTTAACGAGCCTGTGAAATTAGACAG GCCAAATCCATTTGGAACAGCGAGGCCGAGAGAAGATGTATTGGCAGAGAAAGGATTGGATTGGAAGAAGCGGGAAATGGAAATAGAAGCTAAGAAGACT ATGAGCTTACAATCTAGCAGGCCAACTAGTGCGCATTCTAGCAGACCTTCTAGTGGGCAATCGAGTAGGTCTGAAGGGCCAGGGCTGCAGCAACAAGGAT TTGAGAATGTGGCTGTGAAGCCAAGGCCGAAAGTGAATCCTTTTGGAGAGGCAAAGCCCAGGGAGCTTTTGTTGCAGGAAAGAGGTCAGGATTGGAGAAA GATTGACCGTGAGTTGGAGCATCGTGGTGTAGATAGGCCTGAAACTGAAGAGGAAAAATTATTGAAAGAAGAAATAGAGCATTTGAAGAAGGGGCTTGAG AAAGAACTCACAACAAAAGGGAACCAGGAACCTCCACGAGGTTCTGCTGACGACATACCCAGCTTAAGGGAGATGATATCTGAGAAAGAAAGGGAATTAG AAATGTTGGTCCGTGATTTGGATGACAAAGTTCGATTTGGATCGAAAGCCAATGAAAGGCCAGGTTCTGGGGCAGGCAGGGCTTCTGGGTTTTCGGAGAG ACCTCCTTCTAGATCTGGGTTATTTGACGAGTCTAGAAATATGGAGTTAATGGATAGGCCTCGATCTCGTGGCAAGCCAGATATTTGGACAAGGCCTGTT GATGACCGAAGAGCATTTCAAGGTGGAAGGGAAAGAGGATTTCTTGGTAGCGGAGATTTTGACAGGCCGCGGACAGAAGATAGATGGTGA
AA sequence Show only first row Show all	>Potri.008G185400.1 pacid=42808676 polypeptide=Potri.008G185400.1.p locus=Potri.008G185400 ID=Potri.008G185400.1.v4.1 annot-version=v4.1 MSKQRSKIGAWAADAEQAEEEERAAAAAAVSQSSPNLKEVAGTAKTKKKKMSLNEFHSTPIGGGVESRGLTPNVMFGLPTGPKERSDEEMQYGRLGGGFS NYGRTGPQPGHMRDREDSDGSWGGGGGRRQFGGGFDDERRGPSSSRVSDYDQPSRADEVDNWAMDKKPLPSYDSGRQSRYGSLGGGGGGGGGFGGGSRAD EVDNWAVGKKPLPTPSSTFGSGFRDSGPDPDRQSRGGYREPERERPRLVFDSPRGEVGVNEPVKLDRPNPFGTARPREDVLAEKGLDWKKREMEIEAKKT MSLQSSRPTSAHSSRPSSGQSSRSEGPGLQQQGFENVAVKPRPKVNPFGEAKPRELLLQERGQDWRKIDRELEHRGVDRPETEEEKLLKEEIEHLKKGLE KELTTKGNQEPPRGSADDIPSLREMISEKERELEMLVRDLDDKVRFGSKANERPGSGAGRASGFSERPPSRSGLFDESRNMELMDRPRSRGKPDIWTRPV DDRRAFQGGRERGFLGSGDFDRPRTEDRW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26400		EIF4B1	eukaryotic translation initiat...		Potri.008G185400 [exp]	0	1
AT2G39760		ATBPM3	BTB/POZ/MATH-domains containin...		Potri.008G059600 [exp]	2.64	0.8307
AT5G08139			RING/U-box superfamily protein...		Potri.012G065300 [exp]	4.00	0.7815
AT3G61140		EMB78, CSN1, CO...	EMBRYO DEFECTIVE 78, COP9 SIGN...		Potri.002G154500 [exp]	12.00	0.7409	EMB78.2
AT5G58020			unknown protein		Potri.006G186900 [exp]	15.09	0.7767
AT4G24200			Transcription elongation facto...		Potri.005G241400 [exp]	15.93	0.8080
AT4G11860			Protein of unknown function (D...		Potri.001G112300 [exp]	16.09	0.7822
AT3G26400		EIF4B1	eukaryotic translation initiat...		Potri.010G048200 [exp]	18.16	0.7504	EIF4.3
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Potri.009G136000 [exp]	19.59	0.7996
AT2G02090		CHA19, ETL1, CH...	CHROMATIN REMODELING 19, SNF2 ...		Potri.010G099000 [exp]	23.23	0.7901
AT5G28040	GeBP		DNA-binding storekeeper protei...		Potri.009G056400 [exp]	25.29	0.7710

Compare expression of checked genes

Potri.008G185400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.