Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12990 691 / 0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) AT1G67880 659 / 0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) AT3G27540 629 / 0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) AT5G14480 615 / 0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) AT3G01620 584 / 0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) AT2G13290 421 / 4e-147 beta-1,4-N-acetylglucosaminyltransferase family protein (.1.2) AT3G26445 117 / 4e-32 beta-1,4-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G046900 [exp] 763 / 0 AT1G12990 675 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Potri.001G343600 [exp] 630 / 0 AT3G27540 627 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Potri.018G127900 [exp] 449 / 3e-158 AT2G13290 530 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1.2) Potri.006G066700 [exp] 446 / 7e-157 AT2G13290 526 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006474 [exp] 729 / 0 AT1G12990 657 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Lus10006475 [exp] 726 / 0 AT1G12990 654 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Lus10032088 [exp] 636 / 0 AT3G27540 676 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Lus10035231 [exp] 635 / 0 AT3G27540 672 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Lus10003666 [exp] 629 / 0 AT3G27540 670 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Lus10022281 [exp] 626 / 0 AT3G27540 675 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Lus10019400 [exp] 444 / 7e-156 AT2G13290 538 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1.2) Lus10043257 [exp] 441 / 7e-155 AT2G13290 538 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1.2) Lus10038093 [exp] 431 / 4e-151 AT2G13290 533 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1.2) Lus10000322 [exp] 0 / 1 AT1G12990 63 / 4e-23 beta-1,4-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04724 [poplar] [flax] Glyco_transf_17 Glycosyltransferase family 17
Representative CDS sequence Show only first row Show all	>Potri.008G186000.1 pacid=42805971 polypeptide=Potri.008G186000.1.p locus=Potri.008G186000 ID=Potri.008G186000.1.v4.1 annot-version=v4.1 ATGTGGTGGATGATGAATGAAAATGGCGGCCATTACTGCTCCAAGAAGAGTGATGATATCTGTGATGATATTTGTGGCCAGGACTCAGGGCGAATTTTGA GCATGTCCAGAATCCGGTGTATTCTTCGTGGCATGGATTTAAAGACATATTTGCTTCTGTTTATACTCGTGCCAACCTGTGTCTATGGTATTTACATGCA TGGACAGAAGATCTCATCCTTTTTCCGGCCATTATGGGAATCCCCACCAAAAACGTTCAATGAAATCCCACACTATTATCATGAGAATGTGTCGATGGAG AACCTCTGCAAACTCCATGGTTGGGGAATTCGTGAGTTCCCAAGACGTGTTTATGATGCAGTGTTATTCAGTAATGAATTGGACATCCTTGCTTTGCGAT GGAAAGAATTGTACCCTTACATTACACAGTTTGTTCTCCTTGAATCTAATTCAACCTTCACTGGGAAAGAAAAGCTTCTCTCTTTTGCCAACCATCGAGA TCAGTTTAAATTTGTTGAGCCCAGGTTGACCTATGGAACTATCGGAGGGAGGTTTAAGAAAGGAGAGAACCCATTTATCGAAGAGGCATACCAGCGAGTA GCATTGGACCAACTTATCAAAGTAGCAGGGATTTCTGATGATGACTTGCTTATAATGTCAGATGTTGATGAGATACCGAGCAGACACACTATCAATCTCT TGAGGTGGTGTGATGACACTCCTTCAGTTCTTCATCTCCGGCTGAAAAATTATCTTTACTCTTTTGAGTTTCTCAAGGACATTAAAAGTTGGAGAGCTTC AGTCCACAGATATCAGACAGGCAAGACGCGGTATGCACATTATCGCCAGGCAGATGACATTTTGGCAGATGCAGGGTGGCACTGCAGCTTTTGTTTCCGC CGTATAAGCGAGTTTATATTTAAGATGAAAGCTTACAGTCATGTTGATAGAGTCAGGTTCAAACGTTACTTGAACCCTAAAAGAATCCAGAGAGTAATTT GCAAGGGTGCTGATTTATTTGACATGCTTCCTGAGGAGTACACATTCAAGGAAATTATTGGGAAAATGGGACCAATTCCTCACTCCTATTCAGCTGTTCA TCTTCCATCATATCTTCTGGAGAACGCTGACAAGTATAAATTTCTCTTGCCTGGGAACTGCTTAAGAGAAAGTGGGTGA
AA sequence Show only first row Show all	>Potri.008G186000.1 pacid=42805971 polypeptide=Potri.008G186000.1.p locus=Potri.008G186000 ID=Potri.008G186000.1.v4.1 annot-version=v4.1 MWWMMNENGGHYCSKKSDDICDDICGQDSGRILSMSRIRCILRGMDLKTYLLLFILVPTCVYGIYMHGQKISSFFRPLWESPPKTFNEIPHYYHENVSME NLCKLHGWGIREFPRRVYDAVLFSNELDILALRWKELYPYITQFVLLESNSTFTGKEKLLSFANHRDQFKFVEPRLTYGTIGGRFKKGENPFIEEAYQRV ALDQLIKVAGISDDDLLIMSDVDEIPSRHTINLLRWCDDTPSVLHLRLKNYLYSFEFLKDIKSWRASVHRYQTGKTRYAHYRQADDILADAGWHCSFCFR RISEFIFKMKAYSHVDRVRFKRYLNPKRIQRVICKGADLFDMLPEEYTFKEIIGKMGPIPHSYSAVHLPSYLLENADKYKFLLPGNCLRESG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12990			beta-1,4-N-acetylglucosaminylt...		Potri.008G186000 [exp]	0	1
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Potri.005G073100 [exp]	3.87	0.9042
AT5G50900			ARM repeat superfamily protein...		Potri.015G103700 [exp]	9.53	0.8619
AT1G02260			Divalent ion symporter (.1)		Potri.017G141700 [exp]	12.48	0.8790
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.018G012600 [exp]	16.27	0.8749
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Potri.013G102700 [exp]	16.97	0.8122
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G009200 [exp]	18.52	0.8732
AT1G02260			Divalent ion symporter (.1)		Potri.017G141600 [exp]	20.34	0.8745
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.018G012900 [exp]	24.16	0.8716
AT1G02260			Divalent ion symporter (.1)		Potri.017G141650 [exp]	24.28	0.8689
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Potri.017G151800 [exp]	25.21	0.8770

Compare expression of checked genes

Potri.008G186000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.