Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67900 833 / 0 Phototropic-responsive NPH3 family protein (.1.2.3) AT3G26490 520 / 3e-179 Phototropic-responsive NPH3 family protein (.1) AT2G14820 446 / 1e-149 MEL3, NPY2 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) AT5G47800 430 / 3e-144 Phototropic-responsive NPH3 family protein (.1) AT5G67440 402 / 3e-133 MEL2, NPY3 NAKED PINS IN YUC MUTANTS 3, MAB4/ENP/NPY1-LIKE 2, Phototropic-responsive NPH3 family protein (.1.2) AT4G37590 399 / 9e-132 MEL1, NPY5 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) AT4G31820 380 / 9e-125 MAB4, ENP, NPY1 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) AT2G23050 370 / 8e-122 MEL4, NPY4 NAKED PINS IN YUC MUTANTS 4, MAB4/ENP/NPY1-LIKE 4, Phototropic-responsive NPH3 family protein (.1) AT5G03250 326 / 1e-103 Phototropic-responsive NPH3 family protein (.1) AT1G30440 327 / 3e-103 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G046800 [exp] 1060 / 0 AT1G67900 861 / 0.0 Phototropic-responsive NPH3 family protein (.1.2.3) Potri.006G003000 [exp] 484 / 2e-165 AT5G47800 692 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G003700 [exp] 478 / 2e-162 AT5G47800 705 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.005G146400 [exp] 457 / 6e-154 AT2G14820 671 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.009G089500 [exp] 451 / 2e-151 AT2G14820 732 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.018G018600 [exp] 448 / 1e-150 AT4G31820 630 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Potri.001G295600 [exp] 446 / 1e-149 AT2G14820 771 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.006G264300 [exp] 430 / 2e-143 AT4G31820 623 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Potri.017G048200 [exp] 375 / 2e-121 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000443 [exp] 821 / 0 AT1G67900 797 / 0.0 Phototropic-responsive NPH3 family protein (.1.2.3) Lus10039099 [exp] 449 / 4e-151 AT5G47800 655 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10033796 [exp] 439 / 1e-146 AT2G14820 735 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Lus10014632 [exp] 438 / 2e-146 AT2G14820 741 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Lus10042414 [exp] 437 / 3e-146 AT4G31820 612 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Lus10038763 [exp] 396 / 6e-131 AT5G47800 612 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10011525 [exp] 396 / 9e-131 AT4G37590 579 / 0.0 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) Lus10019297 [exp] 384 / 3e-126 AT4G37590 569 / 0.0 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) Lus10026255 [exp] 387 / 2e-122 AT4G31820 557 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 333 / 2e-105 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03000 [poplar] [flax] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Potri.008G186100.7 pacid=42808328 polypeptide=Potri.008G186100.7.p locus=Potri.008G186100 ID=Potri.008G186100.7.v4.1 annot-version=v4.1 ATGAAGTTCATGAAACTCGGATCCCGGCCGGACACGTTCTACACTGCTCAGGCTGTCAGGTCTGTCTCCTCTGAAGTTTCCAGTGACCTTATAGTTCAAG TGAAAGGGAGTAGATATTTGCTTCACAAGTTTCCTCTGCTTTCCAAGTGTTTGCGCCTACAGAGACTGTGCTCTGAATCCCCTGAAACCTCACAACACCA TATAGTCCAACTCCCTGATTTTCCTGGTGGGGTTGAGGCATTTGAACTTTGCGCAAAGTTCTGTTATGGTATTACAATCACTCTTAGTGCCTTCAACATA GTTGCTGTGAGATGTGCTGCGGAATACCTGCAGATGACAGAGGATGTAGAGAAGGGAAACCTAACATACAAGCTTGAAGTTTTCTTCAATTCCTGCATAC TTCATGGGTGGAAAGATTCTATTGTCACTCTACAGAGCACCAAAGAATTTCCTTCGTGGTCAGAAGACCTTGGAATAACAAGCAGATGCATTGAAGCGAT TGCCTCTAAAGTCCTAACTCATCCATCAAAGGTGAGTTTGTCGCACATTTACTCTAGAAGGGAAAGAGATGATGAGTCTTGTAACGGAGCAGAGAGCCAG AGACATAAACCGCCAAGCAAAGGGTGGTGGGCTGAAGATATGGCAGAATTAGGCATAGACCTATATTGGAGAACCATGATAGCAGTCAAGTCCGGTGGAA AGATGCCATCTAGTCTCATAGGGGAGGCCTTGAAAATTTACGCAGCTCGATGGCTACCTAACATATCAAGAGAAAGAAATGTTAATAAGCAAGTAGCATC TGACTCGGATTCAGACTCAACCAATGAGATAACTTCAAAGCATAGGGTGCTTCTAGAATCAATAGTAAGCTTACTCCCAGCTGAGAAAGGTGCTGTATCT TGCAGTTTCCTTCTCAAACTTTTGAAAGCAGCCAATATTCTTAATGCCTCCTCATCTTCAAAGATGGAATTGGCCAGAAGAGTGGCACTTCAAATGGAGG AAGCAACAGTTAGGGATCTGTTAATACCCTCTATCTCATATGCAAACAGTACAGTGTATGATGTAGACTTAGTCATCACCATATTGGAGCAGTTCATGTT ACAAGGGCAGAGTCCTCCCACTAGCCCTCCGAGATCCAAGCTGGGGTTTGAAAGGAGAAGGTCGCGGTCTGCAGAGAATATTGTCTTGGCGTTTCAAGAG AGCAGGAGGTCTTCTTCAGCATCACATAGCTCAAAGTTGAAGGTGGCAAAGCTTGTGGATGGCTATCTTCAAGAGATTGCCCGAGATATGAATTTGCCTC TTTCAAAATTCATCGCACTTGCTGAGGCCATTCCAGATTTCTCAAGGCTTGATCATGATGATCTCTACAGGGCCATTGACATTTATCTCAAGGCACATCC AGACCTAAACAAGAGTGAAAGAAAACGACTGTGCAGAACCCTAGACTGCAAGAAACTATCTGTTGAAGCCTGCATGCATGCCGCACAGAATGAGTTACTC CCACTGAGGGTGGTGGTACAAGTTCTCTTTTTTGAGCAAGCTAGAGCAGCCATGGGTAGTGGCAAAGTCACCGAGCTGCCTAGCAACATCAAAGCACTAC TTGCTGCACACAATATCGATCCTTCAAGGCCAACAACTGCATTAAGCACGACTACTAGCATTCCAGCAGATGACCAATGGAGTGTTTCAGGCCTTAGATC ACCAAAATCTAAGGTTTCAACACTAAGGATGAAATTGGCTGAAGATGATTTAGATGAAAGTGATCTGCAATCAGAAGGGCTCAGGAGAACTTCAAAGTTC AAGTCTTTCTGTGCTCTTCCTACACGACCAAAAAGGATGTTCAGTAAGTTCTTGTCCATCAATAGAAATTCCAGTGAAAAAAACTAG
AA sequence Show only first row Show all	>Potri.008G186100.7 pacid=42808328 polypeptide=Potri.008G186100.7.p locus=Potri.008G186100 ID=Potri.008G186100.7.v4.1 annot-version=v4.1 MKFMKLGSRPDTFYTAQAVRSVSSEVSSDLIVQVKGSRYLLHKFPLLSKCLRLQRLCSESPETSQHHIVQLPDFPGGVEAFELCAKFCYGITITLSAFNI VAVRCAAEYLQMTEDVEKGNLTYKLEVFFNSCILHGWKDSIVTLQSTKEFPSWSEDLGITSRCIEAIASKVLTHPSKVSLSHIYSRRERDDESCNGAESQ RHKPPSKGWWAEDMAELGIDLYWRTMIAVKSGGKMPSSLIGEALKIYAARWLPNISRERNVNKQVASDSDSDSTNEITSKHRVLLESIVSLLPAEKGAVS CSFLLKLLKAANILNASSSSKMELARRVALQMEEATVRDLLIPSISYANSTVYDVDLVITILEQFMLQGQSPPTSPPRSKLGFERRRSRSAENIVLAFQE SRRSSSASHSSKLKVAKLVDGYLQEIARDMNLPLSKFIALAEAIPDFSRLDHDDLYRAIDIYLKAHPDLNKSERKRLCRTLDCKKLSVEACMHAAQNELL PLRVVVQVLFFEQARAAMGSGKVTELPSNIKALLAAHNIDPSRPTTALSTTTSIPADDQWSVSGLRSPKSKVSTLRMKLAEDDLDESDLQSEGLRRTSKF KSFCALPTRPKRMFSKFLSINRNSSEKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67900			Phototropic-responsive NPH3 fa...		Potri.008G186100 [exp]	0	1
AT3G06560		PAPS3	poly(A) polymerase 3 (.1)		Potri.008G102500 [exp]	19.89	0.6790
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Potri.004G055000 [exp]	30.59	0.6539
AT5G50160		ATFRO8, FRO8	ferric reduction oxidase 8 (.1...		Potri.015G083200 [exp]	35.49	0.6670
AT4G28910		NINJA	novel interactor of JAZ (.1.2....		Potri.006G162900 [exp]	36.53	0.6745
AT5G65630		GTE7	global transcription factor gr...		Potri.009G080000 [exp]	54.06	0.5960
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.007G040400 [exp]	83.33	0.6300
AT5G40240			nodulin MtN21 /EamA-like trans...		Potri.015G073200 [exp]	93.24	0.6240
					Potri.009G035950 [exp]	95.43	0.6247
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.002G010466 [exp]	103.15	0.6229
AT5G22390			Protein of unknown function (D...		Potri.004G201500 [exp]	105.98	0.6118

Compare expression of checked genes

Potri.008G186100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.