Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67910 86 / 1e-23 unknown protein AT1G24577 70 / 3e-17 unknown protein AT5G55980 54 / 9e-11 serine-rich protein-related (.1) AT5G20370 45 / 7e-07 serine-rich protein-related (.1) AT3G13227 44 / 8e-07 serine-rich protein-related (.1) AT3G56500 42 / 4e-06 serine-rich protein-related (.1) AT5G25280 38 / 0.0003 serine-rich protein-related (.1.2) AT5G11090 38 / 0.0003 serine-rich protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G046700 [exp] 160 / 1e-52 AT1G67910 82 / 4e-22 unknown protein Potri.018G079200 [exp] 51 / 6e-10 AT1G67910 45 / 9e-08 unknown protein Potri.001G371400 [exp] 52 / 2e-09 AT5G55980 50 / 2e-08 serine-rich protein-related (.1) Potri.002G250700 [exp] 48 / 4e-08 AT3G56500 43 / 5e-06 serine-rich protein-related (.1) Potri.018G023300 [exp] 41 / 2e-05 AT5G11090 194 / 1e-62 serine-rich protein-related (.1) Potri.006G060700 [exp] 40 / 2e-05 AT5G11090 66 / 4e-14 serine-rich protein-related (.1) Potri.006G159300 [exp] 39 / 3e-05 AT1G24577 43 / 5e-07 unknown protein Potri.006G258600 [exp] 40 / 4e-05 AT5G25280 181 / 1e-57 serine-rich protein-related (.1.2) Potri.006G060800 [exp] 40 / 5e-05 AT5G25280 130 / 2e-37 serine-rich protein-related (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000442 [exp] 67 / 7e-16 AT1G67910 56 / 1e-11 unknown protein Lus10026701 [exp] 65 / 3e-15 AT1G67910 56 / 5e-12 unknown protein Lus10023227 [exp] 48 / 3e-08 AT5G55980 69 / 3e-16 serine-rich protein-related (.1) Lus10008880 [exp] 48 / 3e-08 AT5G55980 63 / 1e-13 serine-rich protein-related (.1) Lus10023632 [exp] 45 / 3e-07 AT1G67910 48 / 1e-08 unknown protein Lus10034901 [exp] 44 / 1e-06 AT1G67910 49 / 6e-09 unknown protein Lus10043215 [exp] 40 / 1e-05 AT5G55980 44 / 8e-07 serine-rich protein-related (.1) Lus10008808 [exp] 42 / 2e-05 AT5G25280 153 / 2e-46 serine-rich protein-related (.1.2) Lus10039998 [exp] 42 / 2e-05 AT5G25280 157 / 3e-48 serine-rich protein-related (.1.2) Lus10011094 [exp] 40 / 2e-05 AT5G55980 44 / 1e-06 serine-rich protein-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G186200.9 pacid=42806499 polypeptide=Potri.008G186200.9.p locus=Potri.008G186200 ID=Potri.008G186200.9.v4.1 annot-version=v4.1 ATGGAGAGAGGGCAGATATTCAACAAGGTCATGAAGGTAGAGATTCCATCAGAGACTGAAAGAATGTCGAGTGGTGGCACAAAGTTTACTTCTGGGCTTC AAAGACAGTCAAGCGCTACAAAGAGCAATTGCCTATGCTCTCCAACCTCCCATGCTGGTTCTTTCCGGTGCAGGTTACACCGTGCCCCGAGCCTTCAAAG AACCAAAAGCATTGACTCTGCTTCTCTTCGAGACTCTGAAACTAAGATCAATACGACAGCTGATGGTGCTAGCAATTTAAACACAATTGAGGCCCAGTAA
AA sequence Show only first row Show all	>Potri.008G186200.9 pacid=42806499 polypeptide=Potri.008G186200.9.p locus=Potri.008G186200 ID=Potri.008G186200.9.v4.1 annot-version=v4.1 MERGQIFNKVMKVEIPSETERMSSGGTKFTSGLQRQSSATKSNCLCSPTSHAGSFRCRLHRAPSLQRTKSIDSASLRDSETKINTTADGASNLNTIEAQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67910			unknown protein		Potri.008G186200 [exp]	0	1
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Potri.004G147000 [exp]	4.24	0.7700
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Potri.001G159400 [exp]	5.65	0.7747
AT5G40870		UKL1, ATUK/UPRT...	URIDINE KINASE-LIKE 1, uridine...		Potri.001G332100 [exp]	7.07	0.7802
AT3G27027			Protein of unknown function (D...		Potri.001G328701 [exp]	12.48	0.7726
AT3G05700			Drought-responsive family prot...		Potri.005G020900 [exp]	14.42	0.7445
AT1G22710		SUT1, ATSUC2, S...	SUCROSE TRANSPORTER 1, ARABIDO...		Potri.019G085800 [exp]	15.29	0.7205	SUC2.1
AT1G25330	bHLH	HAF, bHLH075, C...	HALF FILLED, CESTA, basic heli...		Potri.017G115300 [exp]	15.96	0.7404
AT3G24200			FAD/NAD(P)-binding oxidoreduct...		Potri.001G051200 [exp]	18.02	0.6881
AT2G38450			unknown protein		Potri.010G182400 [exp]	25.61	0.6787
AT1G03670			ankyrin repeat family protein ...		Potri.019G101700 [exp]	28.56	0.7721

Compare expression of checked genes

Potri.008G186200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.