Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70620 190 / 2e-49 cyclin-related (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G046000 [exp] 1142 / 0 AT1G70620 187 / 2e-48 cyclin-related (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026699 [exp] 323 / 9e-96 AT1G70620 213 / 4e-57 cyclin-related (.1.2.3) Lus10000440 [exp] 323 / 2e-95 AT1G70620 192 / 2e-50 cyclin-related (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF15996 [poplar] [flax] PNISR Arginine/serine-rich protein PNISR
Representative CDS sequence Show only first row Show all	>Potri.008G186900.2 pacid=42808250 polypeptide=Potri.008G186900.2.p locus=Potri.008G186900 ID=Potri.008G186900.2.v4.1 annot-version=v4.1 ATGGACTCTTACCAACAGCAACAGCAGCATCTCGGATACATGAGACCCCCACCACCACCGCAACAGCAACAACAGCAAGTGCCGCCGCCGCCTGCGGATC CTTACCACTACTATCACCAGTACCAGCAAAGACCACCGCTCCCTCAACAACCACAAGGAGGCACTTCATGGTACTCCAACCCTTTCCAATACAATCCACC ACCACCACCATCACACTCCGTGTCTCCTCCACTTCCCCAGCAGTGGCCTCCCCCTCCCCCTCCCCCTCCCCCCTCTTCTTCATATCCTTATCCCACGCAC CTTCCCCCTCAAAGCCACCACTTCCCTCCTCCTCGCCCCCACGTGCCTCCGCCAACACAACCTCACTCTCAGGAATGGGGGAATCCTAATTGGGAGCAGC ACCAAGCTTGGGAATATCCATCAGCAGCAGGACGTAACCATGTGGAGGATTGGGCTGCTAAGGCCAGAGCATGGGCAGCTACCAAAAACGGTGCATCGGA GGATCAACATCCTCAGTCTCAATTTACAACAGTTGGCAGATCAGAAGAACAAAGTTGGTACTATGATCAGAATCCACAAACTGTTGATACACACTATCAA GGTGTTCAGCAGCAGCCATTTCCTGCGACAACTTATCAACAGTTTCCAGTTTCAGCCGCTCCACACCAGCTGCCAGTAGCTTATCCACAGGAGAATGCAT CTTTCAACATGGGGCAACCTTCACATGTTTATGATAGGCCTCAACCTTACCCTGGTGGAGCTGCAACTTCAAATGCAAGTCCATCTGTTCATCAGCAGGA GGTACCTTCTAGTTATTCTTCTGTTACAGGTAAAGAAGAGACTGGAGATCCAAAGGAGCAGCTTTACAGATCATTGCCTTTGCCCATTTCCTCTGCTCAA GAAGGACAGCATCATCTGCTGCCATCATTGCCTGCTATTGGTAGATCAGTTTTGACTGAGCAGCCCTTTGCATATAGCAATCAGACAGCTAATCCCACAG CTGATCTCAGTAATCAGCCTTTGGAGTTTGCACCTGGTTTCAATTGTGATCATGATCCTCATGCACAATCAAGTTATGCTGCACATCATGATTCAGTAGG AACTGTGAAAGGCATTGGCTCTGCTGCACCCATGCCTTCAATTAGTTCCTGGACCCCTGCTGTTACAACTGGTGTAGTTTATCCTCCAGCTCTTCCACCG GGGCCTCAGGATCCTACCATAGTGCCTTCTTCTGTTTCTGGGCATGCTGCGCCGCCATTTGGAAATTTTCCTGGAACAAGTTTTCAGCCCCCAATTTCAC CTGCTGGTGTGCCATATGGTCTCGGTGCTGGAAATGCACTTCATTCTACTGGAGGCTTCGGAGATGCATATGGGGTTTCTAACATTTCTGAACGCCCCAA AAAGGCTTCTGTGCCTAATTGGCTTAAAGAAGAAATAATTAAGAATGCTTCTGTCATGACGAGGTCCTCTCTTGAACATCCTAGAGAGGAAATAGAATCC ATGGATGAAGAAGGTGTTGATAAATCATTTGAAAAGGGTAATCAAGCAGGTAGCAAAAGCATTGGTTCCCCAAGGTCGACTGAAGAAGAGGATGATGATG AGGATTATGTCGAAGCAGCTAGAAGTGCTGCTATTAACCAGGAAATCAAACGTATCCTAACTGAAGTTCTTTTGAAGGTTACTGATGAGCTGTTTGATGA AATTGCAACAAAAGTTCTTGATGAAGATGACCTGATAATAGAAGTTGAGCACCAACCGGTTGCTTCAAATCATAAGGTACCGTCACCGTCACACCCAGCT ATCTCAACTCCTAAGGCTTCTGCAAAGGTTCTAGTTCCTGTTAGAACCAAGGAATCTGAGAATGAAGATGTCAATGAAAAATCTAGTTCCAGCTCTCATG GAAATGTTTTGGGTCTTGTTAACTATGCCTCTGATGAAGATGATGAAATCGAGAGTTCCAGCATATCAAATTCAAGGAAAAATCCTGTGCCTCAACTGTT GGCCATTCCAGAGAGTGCTGAAGATATGAATGATGCAGCTGAAAATGGCAATTCACAAGTAGAACTCGGAAAGAACTCTCTAGTTACAAATATAGAGAGT GATCTGAGCAAAACAAGTTCAGTTGGTTCTGATAATAAAATCAATGGTGCTTTTAGTGAGTTGAGTGAGCATGCACATTCCAAGGTTGTTTCTGGAGTTA GACATGTTGAGATTAGTGTTAATGGTGAAAAAATACTAGAAAGCAATAACAAGAATGTGCCCAAAGCTACAATTGAAGAAAATGCCAAAATTGAATCTGA TCGAATTGGTGAGTGTGTCAATGTGGAAAAACCAGTGGCGGATTATTCTCAGGCTAGGGATACCAGGGCGAGACCAGATCAAGACAGTCGACATGAAAGT AGAAGTAGTGGGAGTATGGCAGATGAGAAGGGGGATGATGGTCATAGGAGACATGATGCAAAACATTCGAGCAAGGAAAAAACAGGTGATCTGAATGGTT CAAAAGAGAAAAGGAGAGAAAGAAAAGATAAGACAGGAGAGAGTGCAAAGGAACCAGAATCAAGAAGAAGGTCTTCTCGTCCTGAAGTTAAGGAGGACAG GAAAGATGCAGAAAAACTGCACAGATCTAGTGTCAAAGAAGATGCCACCAGAAAGAGAGATCGCTCAAAGGAAAAGGAGGAAGATAGAGCAAGACATAAA CCTACCAGTGACTCAAGCAAGCACAAGAGAACACGTTCCTCTTCAATCAGCAGTAGGGGTAGAAACAGCAAGGACAATGATTCAAGTGATGAAGCATCAG ATGATTCTAAGAGGAAACATTCCAGGAAACGACGTTCTTCACCATCACCTGTCAGATCTAGAAGAAGACAAGTATCGCGGTCACCTCATAGCAAGCATTC TCAGCGCAGGCATTCTCCCTACTCTTCTCTTGAGACCACAAGGAGAAGGAGATCAAGATCCCAATCACCTGTCAGGCGACACAAATGA
AA sequence Show only first row Show all	>Potri.008G186900.2 pacid=42808250 polypeptide=Potri.008G186900.2.p locus=Potri.008G186900 ID=Potri.008G186900.2.v4.1 annot-version=v4.1 MDSYQQQQQHLGYMRPPPPPQQQQQQVPPPPADPYHYYHQYQQRPPLPQQPQGGTSWYSNPFQYNPPPPPSHSVSPPLPQQWPPPPPPPPPSSSYPYPTH LPPQSHHFPPPRPHVPPPTQPHSQEWGNPNWEQHQAWEYPSAAGRNHVEDWAAKARAWAATKNGASEDQHPQSQFTTVGRSEEQSWYYDQNPQTVDTHYQ GVQQQPFPATTYQQFPVSAAPHQLPVAYPQENASFNMGQPSHVYDRPQPYPGGAATSNASPSVHQQEVPSSYSSVTGKEETGDPKEQLYRSLPLPISSAQ EGQHHLLPSLPAIGRSVLTEQPFAYSNQTANPTADLSNQPLEFAPGFNCDHDPHAQSSYAAHHDSVGTVKGIGSAAPMPSISSWTPAVTTGVVYPPALPP GPQDPTIVPSSVSGHAAPPFGNFPGTSFQPPISPAGVPYGLGAGNALHSTGGFGDAYGVSNISERPKKASVPNWLKEEIIKNASVMTRSSLEHPREEIES MDEEGVDKSFEKGNQAGSKSIGSPRSTEEEDDDEDYVEAARSAAINQEIKRILTEVLLKVTDELFDEIATKVLDEDDLIIEVEHQPVASNHKVPSPSHPA ISTPKASAKVLVPVRTKESENEDVNEKSSSSSHGNVLGLVNYASDEDDEIESSSISNSRKNPVPQLLAIPESAEDMNDAAENGNSQVELGKNSLVTNIES DLSKTSSVGSDNKINGAFSELSEHAHSKVVSGVRHVEISVNGEKILESNNKNVPKATIEENAKIESDRIGECVNVEKPVADYSQARDTRARPDQDSRHES RSSGSMADEKGDDGHRRHDAKHSSKEKTGDLNGSKEKRRERKDKTGESAKEPESRRRSSRPEVKEDRKDAEKLHRSSVKEDATRKRDRSKEKEEDRARHK PTSDSSKHKRTRSSSISSRGRNSKDNDSSDEASDDSKRKHSRKRRSSPSPVRSRRRQVSRSPHSKHSQRRHSPYSSLETTRRRRSRSQSPVRRHK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G70620			cyclin-related (.1.2.3)		Potri.008G186900 [exp]	0	1
AT1G70620			cyclin-related (.1.2.3)		Potri.010G046000 [exp]	1.00	0.8917
AT5G44180	HD		Homeodomain-like transcription...		Potri.007G135500 [exp]	1.41	0.8786
AT3G22430			unknown protein		Potri.010G235700 [exp]	2.82	0.8327
AT3G28030		UVR1, UVH3	UV REPAIR DEFECTIVE 1, ULTRAVI...		Potri.017G070500 [exp]	3.00	0.8538
AT5G44180	HD		Homeodomain-like transcription...		Potri.017G016200 [exp]	3.74	0.8331
AT5G57250			Pentatricopeptide repeat (PPR)...		Potri.018G143800 [exp]	4.47	0.8181	CYP71.3
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.006G242500 [exp]	5.47	0.8333
AT5G22320			Leucine-rich repeat (LRR) fami...		Potri.004G199200 [exp]	8.66	0.7823
AT2G39260			binding;RNA binding (.1)		Potri.010G216100 [exp]	9.00	0.8292
AT3G23900			RNA recognition motif (RRM)-co...		Potri.017G058300 [exp]	9.16	0.8077

Compare expression of checked genes

Potri.008G186900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.