Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26590 660 / 0 MATE efflux family protein (.1) AT1G12950 646 / 0 RSH2 root hair specific 2 (.1) AT5G38030 645 / 0 MATE efflux family protein (.1) AT1G23300 608 / 0 MATE efflux family protein (.1) AT1G47530 513 / 1e-179 MATE efflux family protein (.1) AT4G00350 474 / 2e-163 MATE efflux family protein (.1) AT4G25640 440 / 7e-151 FFT, ATDTX35 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) AT1G11670 434 / 1e-148 MATE efflux family protein (.1) AT3G21690 431 / 4e-147 MATE efflux family protein (.1) AT1G61890 426 / 2e-145 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G063500 [exp] 728 / 0 AT3G26590 681 / 0.0 MATE efflux family protein (.1) Potri.012G144900 [exp] 446 / 1e-152 AT4G25640 574 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.011G002800 [exp] 443 / 5e-152 AT3G21690 656 / 0.0 MATE efflux family protein (.1) Potri.015G147600 [exp] 443 / 7e-152 AT4G25640 523 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.011G002200 [exp] 441 / 5e-151 AT1G11670 669 / 0.0 MATE efflux family protein (.1) Potri.004G016400 [exp] 439 / 2e-150 AT3G21690 646 / 0.0 MATE efflux family protein (.1) Potri.014G153100 [exp] 437 / 9e-150 AT3G21690 704 / 0.0 MATE efflux family protein (.1) Potri.011G002700 [exp] 437 / 1e-149 AT3G21690 646 / 0.0 MATE efflux family protein (.1) Potri.011G002900 [exp] 435 / 6e-149 AT3G21690 654 / 0.0 MATE efflux family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036854 [exp] 706 / 0 AT3G26590 666 / 0.0 MATE efflux family protein (.1) Lus10006206 [exp] 704 / 0 AT3G26590 664 / 0.0 MATE efflux family protein (.1) Lus10006205 [exp] 662 / 0 AT3G26590 686 / 0.0 MATE efflux family protein (.1) Lus10036851 [exp] 641 / 0 AT3G26590 675 / 0.0 MATE efflux family protein (.1) Lus10036852 [exp] 562 / 0 AT1G23300 598 / 0.0 MATE efflux family protein (.1) Lus10042130 [exp] 537 / 0 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10010035 [exp] 511 / 8e-179 AT1G47530 665 / 0.0 MATE efflux family protein (.1) Lus10027504 [exp] 468 / 1e-161 AT4G25640 683 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Lus10039263 [exp] 466 / 4e-161 AT4G25640 691 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Lus10026323 [exp] 466 / 5e-161 AT1G47530 525 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.008G187100.2 pacid=42807556 polypeptide=Potri.008G187100.2.p locus=Potri.008G187100 ID=Potri.008G187100.2.v4.1 annot-version=v4.1 ATGGAGGGTGGCAGGCAATCACTTGTCTCCCGACAAAACGATCACCAGAATCGAGACCAGCACTTACGATCAACAAACTCCTCCATCGCCTCCTCCTTCA CTCCTGATCCTGATGACATCCCTCTAATCAACAGTGTCCGTGATTTCTCCAGAGAATTCTTTAGAGAGTCCAAGAAGCTATGGTATCTTGCCGGCCCTGC CATCTTCACCACCTTGTGCCAGTACTCCCTTGGTGCTATCACTCAGCTTCTTGCTGGACATGTTGGCACGCTGGATCTAGCTGCTGTCTCTGTTGAGAAT TCTGTCATTGCTGGATTCTCTTTTGGTATCATGCTTGGCATGGGGAGTGCCTTGGAAACCCTTTGTGGACAAGCGTATGGAGCAGGGCAGCTTGATATGC TAGGACTCTATATGCAAAGATCTTGGGTCATTCTTAATGCCACAGCTGTTATACTTACCCTTTTATATATCTTTGCTGGACCATTTTTGAAGCTTATTGG TCAGACAGCAGAGATATCACAGGCGGCAGGGATGTTCTCGGTGTGGATGATACCACAGCTATTTGCTTATGCAATGAACTTTCCAATTGCAAAGTTCTTA CAAGCTCAAAGCAAGATGATGGCTATGGCTGCTATAGCGGCAGTGGCCATAGTTTTCCATGCCGTTTTCAGTTGGCTATTGATGTTGAAATTAGGCTGGG GTCTGGTGGGTGCAGCCGTGGTTCTAAACGCGTCATGGTGGTTCATAGTGATTGCTCAACTGTTGTATATTTTTAGTGGAACTTGCGGGGAAGCATGGAC CGGACTTTCTTGGAAAGCTTTTCAAAATCTCTGGGGATTTGTTAGGTTATCTCTGGCATCAGCTGTAATGCTTTGCCTGGAAGTATGGTATTTCATGGCA TTAATACTGTTCGCCGGATATCTAAAAAATGCTGAACTTGCAGTGGATGCCTTGTCTATAAGCACCAACATAGTGGGTTGGGCGCTCATGATAGCCATTG GAATCAACGCAGCCATAAGCGTGAGAGTGTCAAATGAACTAGGAGCTGCCCACCCAAGAACTGCCAAATTCTCTTTAGTAGTGGCCACGCTAGCTTCGCT TATGATAGGCCTCGTAATCGCACTAATTCTTGTCCTGGCACGGAACCTATACCCAGACTTGTTTACGAACGATGCTGGAGTCAAGGAACTAGTAAAGGAG CTCACACCTCTCCTCGCTGTCTGCATCATCATCAATAATGTTCAACCAGTTCTCTCAGGGGTGGCCATTGGAGCAGGATGGCAAGCTGCTGTTGCTTATG TAAACATAGGGTGTTACTACATATTTGGAATTCCCTTGGGTCTCATTCTTGGTTTTTGGCTTCAAATGGGTGTCCAGGGAATTTGGATTGGAATGCTGAC AGGGACTGCCGTGCAAACTGCCGTTCTCTTCTGGATGATTGGTAAAACCAATTGGAACACAGAGGCTTCTGCTGCCGAAGAGAGGATAAGGAAATGGGGG TGGGGAAGATGA
AA sequence Show only first row Show all	>Potri.008G187100.2 pacid=42807556 polypeptide=Potri.008G187100.2.p locus=Potri.008G187100 ID=Potri.008G187100.2.v4.1 annot-version=v4.1 MEGGRQSLVSRQNDHQNRDQHLRSTNSSIASSFTPDPDDIPLINSVRDFSREFFRESKKLWYLAGPAIFTTLCQYSLGAITQLLAGHVGTLDLAAVSVEN SVIAGFSFGIMLGMGSALETLCGQAYGAGQLDMLGLYMQRSWVILNATAVILTLLYIFAGPFLKLIGQTAEISQAAGMFSVWMIPQLFAYAMNFPIAKFL QAQSKMMAMAAIAAVAIVFHAVFSWLLMLKLGWGLVGAAVVLNASWWFIVIAQLLYIFSGTCGEAWTGLSWKAFQNLWGFVRLSLASAVMLCLEVWYFMA LILFAGYLKNAELAVDALSISTNIVGWALMIAIGINAAISVRVSNELGAAHPRTAKFSLVVATLASLMIGLVIALILVLARNLYPDLFTNDAGVKELVKE LTPLLAVCIIINNVQPVLSGVAIGAGWQAAVAYVNIGCYYIFGIPLGLILGFWLQMGVQGIWIGMLTGTAVQTAVLFWMIGKTNWNTEASAAEERIRKWG WGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26590			MATE efflux family protein (.1...		Potri.008G187100 [exp]	0	1
AT2G14095			unknown protein		Potri.017G050000 [exp]	2.44	0.9181
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Potri.015G087500 [exp]	4.47	0.9100
					Potri.009G135000 [exp]	6.00	0.8872
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Potri.015G087400 [exp]	6.24	0.8931	Pt-CYSP2.1
AT5G23750			Remorin family protein (.1.2)		Potri.012G140800 [exp]	7.00	0.8228
AT1G20970			unknown protein		Potri.016G047500 [exp]	11.61	0.8869
AT3G15510	NAC	ATNAC2, ANAC056...	NAC-REGULATED SEED MORPHOLOGY ...		Potri.001G404400 [exp]	13.85	0.8679	Pt-ATNAC2.2
AT1G09890			Rhamnogalacturonate lyase fami...		Potri.002G110200 [exp]	15.90	0.8610
AT4G04320			malonyl-CoA decarboxylase fami...		Potri.011G010400 [exp]	17.94	0.8408
AT2G26670		GUN2, ATHO1, TE...	REVERSAL OF THE DET PHENOTYPE ...		Potri.018G131700 [exp]	19.74	0.8577

Compare expression of checked genes

Potri.008G187100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.