Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70590 404 / 8e-142 F-box family protein (.1) AT1G18260 64 / 4e-11 HRD3A, EBS5 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1) AT1G73570 59 / 2e-09 HCP-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G045300 [exp] 546 / 0 AT1G70590 434 / 2e-153 F-box family protein (.1) Potri.015G038100 [exp] 49 / 5e-06 AT1G18260 994 / 0.0 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1) Potri.012G046300 [exp] 47 / 2e-05 AT1G18260 949 / 0.0 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026694 [exp] 443 / 3e-157 AT1G70590 412 / 1e-144 F-box family protein (.1) Lus10004621 [exp] 380 / 8e-134 AT1G70590 337 / 1e-116 F-box family protein (.1) Lus10009680 [exp] 49 / 5e-06 AT1G18260 1010 / 0.0 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1) Lus10009042 [exp] 49 / 5e-06 AT1G18260 1020 / 0.0 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain CL0020 [poplar] [flax] TPR PF08238 [poplar] [flax] Sel1 Sel1 repeat
Representative CDS sequence Show only first row Show all	>Potri.008G187200.3 pacid=42806374 polypeptide=Potri.008G187200.3.p locus=Potri.008G187200 ID=Potri.008G187200.3.v4.1 annot-version=v4.1 ATGAAGCAGAAAACTTGGCCTGGTCGCCAATACCGTCAATCAACCTTTAAATTCTGGTTATCATCAGAAGCAGATTTTCGGCAATTAAGATCATCCGATG GTGATTTCTCGACACTTCCCTCCGATATTTTGACCAAAATAGCGGCATCGTTCACACTGCCTCATCTGCAAACAGCGTCTTTGGTGTGCAAGTCATGGAG CGAAGGGCTTCGGCCATTGAGAGAAGCCTTGTTGTTCCTAAAATGGGGAAAGCGGTTCAAGCATGGCCGGGGAGGTGTGCGACCTAATTTGGACAAGGCT CTCGACTCCTTTTTAAAAGGCGCGGTTCGTGGGTCCACCCTCGCCATGGTTGATGCTGGTCTTCTTTACTGGGAAATTGGTAAAAAAGACAAGGCAATTG CCCTTTATAAAAAGGCTGCAGTGCTTGGAGACCCTTCTGGACAGTGTAATCTTGGACTTTCTTACTTGCAAGCCGAACCTTCAAAACGAAAGGAAGCAGT GAAATGGTTGTTTCAGGCTTCCAAATCTGGTCATGTTCGTGCTCAATACCAACTCGCACTTTGTTTGCATCAAGGTTGTGGATTTGATCGTCATCTACAC GAGGCTGCTAGATGGTATCTAAAAGCGGCTGAAGGTGGATATGTGCGTGCAATGTACCGTGTTGCTTTGTGTTACTCAGTTGGGGAAGGTTTGGCTCAGA GTCATCGCCAAGCAAGGAAATGGATGAAGCGGGCAGCCGATCGTGGTCATAGCAAAGCTCAGTATGAGCATGGACTTGGACTCTTTTCGGAAGGAGAGAA GTTGAAAGCTGTAGTTTACCTGGAACTTGCCACTCATGCTGGTGAAACAGCTGCTGTTCATGTCAAGAATGTGATTTTACAACAACTACCAGCAACTTCA CGTGATCATGTCATGAACCTTGCTAATAATTGGCGTGCTTTGCCTTCTCTCTGA
AA sequence Show only first row Show all	>Potri.008G187200.3 pacid=42806374 polypeptide=Potri.008G187200.3.p locus=Potri.008G187200 ID=Potri.008G187200.3.v4.1 annot-version=v4.1 MKQKTWPGRQYRQSTFKFWLSSEADFRQLRSSDGDFSTLPSDILTKIAASFTLPHLQTASLVCKSWSEGLRPLREALLFLKWGKRFKHGRGGVRPNLDKA LDSFLKGAVRGSTLAMVDAGLLYWEIGKKDKAIALYKKAAVLGDPSGQCNLGLSYLQAEPSKRKEAVKWLFQASKSGHVRAQYQLALCLHQGCGFDRHLH EAARWYLKAAEGGYVRAMYRVALCYSVGEGLAQSHRQARKWMKRAADRGHSKAQYEHGLGLFSEGEKLKAVVYLELATHAGETAAVHVKNVILQQLPATS RDHVMNLANNWRALPSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G70590			F-box family protein (.1)		Potri.008G187200 [exp]	0	1
AT3G62800		DRB4	double-stranded-RNA-binding pr...		Potri.019G038100 [exp]	2.00	0.7975
					Potri.019G120400 [exp]	11.13	0.7233
AT3G62800		DRB4	double-stranded-RNA-binding pr...		Potri.019G038226 [exp]	13.41	0.7202
					Potri.005G209300 [exp]	16.88	0.6831
AT5G22850			Eukaryotic aspartyl protease f...		Potri.001G213600 [exp]	23.32	0.6850
AT2G44980		ASG3	ALTERED SEED GERMINATION 3, SN...		Potri.014G056700 [exp]	26.92	0.6700
AT3G24590		PLSP1	plastidic type i signal peptid...		Potri.002G079600 [exp]	27.74	0.6301
AT1G56170	CCAAT	NF-YC2, ATHAP5B...	"nuclear factor Y, subunit C2"...		Potri.007G070900 [exp]	28.84	0.7071
AT1G61065			Protein of unknown function (D...		Potri.004G038700 [exp]	30.62	0.6900
					Potri.010G139550 [exp]	34.79	0.7080

Compare expression of checked genes

Potri.008G187200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.