Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51940 362 / 5e-117 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT3G21630 291 / 3e-90 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT3G20530 225 / 2e-67 Protein kinase superfamily protein (.1) AT5G18610 224 / 1e-65 Protein kinase superfamily protein (.1.2) AT5G02800 218 / 3e-65 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT3G24790 218 / 5e-65 Protein kinase superfamily protein (.1) AT1G61860 216 / 2e-64 Protein kinase superfamily protein (.1) AT1G10620 223 / 7e-64 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT1G24030 214 / 1e-63 Protein kinase superfamily protein (.1.2) AT4G02010 222 / 2e-63 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G081601 [exp] 696 / 0 AT1G51940 337 / 5e-107 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.T125208 [exp] 691 / 0 AT1G51940 336 / 9e-107 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.001G190200 [exp] 357 / 1e-114 AT1G51940 824 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.006G252600 [exp] 340 / 7e-109 AT1G51940 326 / 4e-103 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.002G226600 [exp] 284 / 2e-87 AT3G21630 697 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.014G156400 [exp] 278 / 5e-85 AT3G21630 678 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.011G010000 [exp] 277 / 8e-85 AT3G21630 673 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.011G137000 [exp] 226 / 4e-68 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Potri.001G421400 [exp] 226 / 4e-68 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004625 [exp] 661 / 0 AT1G51940 347 / 7e-111 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10026689 [exp] 656 / 0 AT1G51940 348 / 4e-111 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10027677 [exp] 525 / 1e-180 AT1G51940 320 / 7e-101 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10006841 [exp] 374 / 7e-121 AT1G51940 812 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10037586 [exp] 373 / 1e-120 AT1G51940 807 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10035301 [exp] 290 / 7e-90 AT3G21630 578 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10030022 [exp] 281 / 8e-87 AT3G21630 692 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10035302 [exp] 282 / 4e-83 AT3G21630 706 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10040050 [exp] 226 / 9e-68 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Lus10011148 [exp] 225 / 2e-67 AT3G20530 560 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0187 [poplar] [flax] LysM PF01476 [poplar] [flax] LysM LysM domain
Representative CDS sequence Show only first row Show all	>Potri.008G187500.3 pacid=42806559 polypeptide=Potri.008G187500.3.p locus=Potri.008G187500 ID=Potri.008G187500.3.v4.1 annot-version=v4.1 ATGACTTCCCACAATTTCCTTCTTGGTCTCCTGATCACTTTAATGGCAACCCTAGTAGCTTTAGGTTTTGCCTCTGATGACTCCACCAATTCACCAAATA TGTACCCATTTACTTGCTCTGATTCTGAAGACATCAAAATTTGTAATGCCTCACTGTACCATACCAACTACGACAGCTTACAGAAAGAACAGCTTGCTTC CATTTATGGTGTCAGCCCAGCTCAGATCATTTCTATTTCCTATGCAAGCCGACAAGACTATCTTGTAACGGTACCTTGCTCGTGCAAAAATATCAATGGC ACTGTTGGATACTTCTATGATGCAATCCACAACGTAAGTCAAGGAGAACTGTTTTCTAATGTTTCAGCTCAGATTTTTAATGGGCAAGCTTGGTGGGTTG AAGATGAAGCGTGGTTGTTTAATCCAAGAAATAATTTCTCCATGCATCTCTTGTGTGGGTGTACAAAAAGCAAATCCCAAATTGTGGTAACATATACTGT TCAGCAGCATGACACATTATCAGATATTTCAACCAGGCTATCATCTACAGTAGGTGGCATACAGAGCATGAACATAAATCTGATTAAGAACCCAAGTTCC ATAAATGTGGATTGGGTGCTGTTTGTTCCCATGGACAGTAAACCGGCCTCTGGAAAAGGATCAGGAAGGGGACACAAATGGATAATAATCGTCGGCATAC TATCTTCTCTGACAGCACTTTCAATCATCACATTGGTAATCCTCCTTCTTAGGAGAAAAGGATGCCGACAGAACAGCGAGGAGGACTTGAAACCTGTACC CAAAAGCATGAGCACGAACAGAGCATTTTCCTTGCAGAGTCTGTACAAGGGAAGTAACGAAGATGGGACAGCTTTTGAATCAGAAAAACCAGTCGTCTTT AGTCTAGAAGAGATTGAAGAGGCTACAAAAAGCTTTGACAAAACGAAGAAAATCGGAGAGGGTGGATATGGATGTGTGTACCATGGATTATTGCGAGGAC AGGAGGTTGCAGTAAAGAAGATGAGATCAAACAAATCCCATGAGTTTTTTGCAGAGCTCAAGGTCTTATGTAAGATCCATCACATAAATGTGGTGGAACT TCTGGGTTATGCCGGTGGAGATGATCACTTCTACTTGATTTATGAGTATGTTCGAAATGGGTCACTTAGTGATCACCTTCACGATCCATTGCTAAAAGGT CACCAGCCACTCTCTTGGACAGCAAGAGCACAGATTGCCCTTGATGCTGCAAAGGGAATTGAATACATCCATGACCACACCAAAGCACGCTATGTGCACA GAGATATAAAGACAAGTAACATTCTACTCGATGAGGGACTGCGAGCAAAGGTTGCAGATTTTGGATTGGCAAAGCTTGTTGAACGAACGAGTGATGAAGA TTTAATAGCAACACGACTGGTAGGAACACCAGGCTATCTTCCACCAGAATCTGTGAAGGAGCTGCAGGTGACTTCCAAAACTGATGTATTTGCATTTGGA GTAGTTTTAGCTGAGCTGATAACAGGACAACGTGCACTTTTGCGTGACAATCGAGAGAGAAACAAGATGAAATCACTCATCACAGTTGTCTACAAAATTT TTGAAGATAAAGATCCAGAGACTGCTTTAGCAGATGTCATAGACAAAAATCTCCGCAACAGCTACCCCATGGAGGATGTCTACAAGATGGCAGAAATTGC TGACTGGTGTTTGAGCGAAGAAGCAATTAATAGACCAGAGATGCGAGAAGTAGTTCAAAAATTATCTATGATCGTAGTGTCCTCAGTAGAGTGGGAGGCT TCACTGGGAGGGAGCAGCATATTTAGTGGGGTTTTTAATGGAAGATGA
AA sequence Show only first row Show all	>Potri.008G187500.3 pacid=42806559 polypeptide=Potri.008G187500.3.p locus=Potri.008G187500 ID=Potri.008G187500.3.v4.1 annot-version=v4.1 MTSHNFLLGLLITLMATLVALGFASDDSTNSPNMYPFTCSDSEDIKICNASLYHTNYDSLQKEQLASIYGVSPAQIISISYASRQDYLVTVPCSCKNING TVGYFYDAIHNVSQGELFSNVSAQIFNGQAWWVEDEAWLFNPRNNFSMHLLCGCTKSKSQIVVTYTVQQHDTLSDISTRLSSTVGGIQSMNINLIKNPSS INVDWVLFVPMDSKPASGKGSGRGHKWIIIVGILSSLTALSIITLVILLLRRKGCRQNSEEDLKPVPKSMSTNRAFSLQSLYKGSNEDGTAFESEKPVVF SLEEIEEATKSFDKTKKIGEGGYGCVYHGLLRGQEVAVKKMRSNKSHEFFAELKVLCKIHHINVVELLGYAGGDDHFYLIYEYVRNGSLSDHLHDPLLKG HQPLSWTARAQIALDAAKGIEYIHDHTKARYVHRDIKTSNILLDEGLRAKVADFGLAKLVERTSDEDLIATRLVGTPGYLPPESVKELQVTSKTDVFAFG VVLAELITGQRALLRDNRERNKMKSLITVVYKIFEDKDPETALADVIDKNLRNSYPMEDVYKMAEIADWCLSEEAINRPEMREVVQKLSMIVVSSVEWEA SLGGSSIFSGVFNGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G51940			protein kinase family protein ...		Potri.008G187500 [exp]	0	1
					Potri.009G170400 [exp]	2.44	0.8926
AT3G55820			Fasciclin-like arabinogalactan...		Potri.008G065101 [exp]	3.46	0.8880
AT3G61550			RING/U-box superfamily protein...		Potri.014G091000 [exp]	3.74	0.8671
AT4G29820		CFIM-25, ATCFIM...	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.006G146400 [exp]	4.00	0.8627
AT3G52040			unknown protein		Potri.009G056800 [exp]	4.89	0.8712
					Potri.001G440250 [exp]	6.08	0.8219
					Potri.004G202050 [exp]	7.93	0.8578
AT5G15080			Protein kinase superfamily pro...		Potri.010G033800 [exp]	8.66	0.8738
AT1G27050	HD	ATHB54	homeobox protein 54 (.1)		Potri.010G034500 [exp]	8.77	0.8570
AT2G02360		ATPP2-B10	phloem protein 2-B10 (.1)		Potri.001G050100 [exp]	9.00	0.8293

Compare expression of checked genes

Potri.008G187500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.