Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07040 89 / 2e-18 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT3G46730 89 / 3e-18 NB-ARC domain-containing disease resistance protein (.1) AT1G58400 88 / 4e-18 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G59780 87 / 9e-18 NB-ARC domain-containing disease resistance protein (.1) AT1G58848 86 / 2e-17 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G59218 86 / 2e-17 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT3G46710 82 / 3e-16 NB-ARC domain-containing disease resistance protein (.1) AT1G58807 80 / 1e-15 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G59124 80 / 2e-15 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58602 77 / 2e-14 LRR and NB-ARC domains-containing disease resistance protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G044601 [exp] 543 / 0 AT1G58400 112 / 2e-26 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.012G083700 [exp] 241 / 6e-74 AT1G58400 108 / 4e-25 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.001G134500 [exp] 152 / 6e-39 AT3G07040 422 / 1e-132 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.005G035400 [exp] 139 / 1e-34 AT3G07040 422 / 6e-133 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134475 [exp] 138 / 2e-34 AT3G07040 413 / 1e-129 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134400 [exp] 138 / 2e-34 AT3G07040 427 / 3e-134 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.002G216800 [exp] 133 / 9e-33 AT3G07040 573 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.003G098900 [exp] 130 / 2e-32 AT3G07040 290 / 1e-87 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134300 [exp] 131 / 4e-32 AT3G07040 487 / 2e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028075 [exp] 281 / 1e-86 AT3G07040 168 / 1e-43 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10028076 [exp] 211 / 7e-61 AT1G58848 147 / 6e-37 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) Lus10025625 [exp] 148 / 1e-40 AT5G43470 101 / 6e-24 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) Lus10038983 [exp] 129 / 2e-31 AT3G07040 468 / 5e-150 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10027281 [exp] 127 / 9e-31 AT3G07040 459 / 5e-147 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10025626 [exp] 114 / 2e-27 AT3G46530 87 / 5e-18 RECOGNITION OF PERONOSPORA PARASITICA 13, NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 110 / 4e-25 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10002945 [exp] 103 / 7e-23 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10041243 [exp] 98 / 4e-21 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014922 [exp] 97 / 1e-20 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G187700.2 pacid=42807588 polypeptide=Potri.008G187700.2.p locus=Potri.008G187700 ID=Potri.008G187700.2.v4.1 annot-version=v4.1 ATGCCTTATTTCAAGTGCACTCAAGAGATAGGTAAGCCTGACTTGGTTCCTGAGGAATTTCATGGAAGTAAATCTCAAGCTGGTGTTGTTCCAAGTACAT CAACAGCAGAAGGAATAAGCTCATCAAGAGTCGCTGACAATACAGGTGAGAGTTCTTCTTCAGAAACCTGCAAATCAAATTATGCAAAGCTTCCTGATTA TCTTAGATCCTGCCTAGACTACTCGTCCTTTGTTAGCAATAGATATCCTGTAGAGATAGGAAAACTAGTTCGGCTTTTGTTGGCTGAAGGTCTTATACAA GACAAGCCAGGGGATATCATGGAGGATGTAGCAGCAAATGTTGTTAAGGAATTGATTGACCTAGGAATGCTTCAAGAAGTACACGATGGGACTGAAGTAA AAGTCCCTCCCTCTTATCTCCAGTTATCTATTCTTAAATTGGAGAAACAAGATTTTGTTTCTAAAACTGCAAATTCACCTGTTCGTTTGGCGATCAGAGA TGGTGGAAGGGATATCTTTCCTAACGTCGAAGGCCGTCTAGTTCGATCTTTATTTATAATCACTGCCGAACGTCGTCATGATTCTTTTGGTTCAACCGGA TGCCTCTCGCGGGCCTATATGGGAAATGTTTGCGGGATGCGGTTTCTGTTGGTGTTGGATTTGGATGGCAAGATAGCGTACTTGCCTGATGAAGTGGGAG ACTTGATTCACCTGAGGTACTTAGGCTTGGCTAACTCGGATCTAGATGAGCTTCCTCGGACTTTAGGTAATCTTCAAAAACTGCAAACTTTGGATATAAG AATGTGTGGGAAACTGAGCAAACTACCAATAGAAGTCCTGCATATCCAACAGTTGAGACACCTTCTAATGTCCAAAAGCATTAATGATTGTGAAATTAGA GTTTCGGAGGGAATTGGAAAAATGGTAAATCTCCACACTTTGTCTGGTATTTATGGTGGAGACGGGATTGCTAGAGAATTGAGTGCCTTAACTCAGATAA AAGATCTTGGCGTTAAGCGTGTGTCTGAAGATCATGCCAGTGAGCTGTTTGCAGCAATAAAGAAGATGGAAAGCCTCGCATCCCTATCGTTAGAAGCAGA GGAATGCTTTTTTGAAGAAACAAATTGCGCTCTTTTTCCTGAATTGGATGCATTTTCTCCTCCACCTCTTCTTCAAGAGTTCTATTTACATGGGGGCTTA ATTGAGATTCCCATGTGGCTTGCCTCCATGGAAAACCTCACCCGTCTAACTTTATCCTTTTCTTTTTTATGGGAGAATCCAACCTCAGTCCTTCAGTTGC TTCCGAAATTGAAGCACCTCAACCTCTGGGAAGCCTACAGAGCAAAGCACATTGGTAAAGAATTTTGCAATGCAGGCGGTTTCCCGGCTCTGGAAACTCT CACGATTGCTTCTCAGTTCCTAGTGGAGTGGACTGAAATTGCAACTGGGGCTTTTCCAAGTTTAAGATCTCTTAGTTTTAGATGTTGTTTAAGCTTGATT TTTTTCCTGAAGGCTTGCAGAACATTTCCACACTTCAAGAGCTGTATTTGGACTCCATGCCACCAGACCTTGCAAGGCGATTGA
AA sequence Show only first row Show all	>Potri.008G187700.2 pacid=42807588 polypeptide=Potri.008G187700.2.p locus=Potri.008G187700 ID=Potri.008G187700.2.v4.1 annot-version=v4.1 MPYFKCTQEIGKPDLVPEEFHGSKSQAGVVPSTSTAEGISSSRVADNTGESSSSETCKSNYAKLPDYLRSCLDYSSFVSNRYPVEIGKLVRLLLAEGLIQ DKPGDIMEDVAANVVKELIDLGMLQEVHDGTEVKVPPSYLQLSILKLEKQDFVSKTANSPVRLAIRDGGRDIFPNVEGRLVRSLFIITAERRHDSFGSTG CLSRAYMGNVCGMRFLLVLDLDGKIAYLPDEVGDLIHLRYLGLANSDLDELPRTLGNLQKLQTLDIRMCGKLSKLPIEVLHIQQLRHLLMSKSINDCEIR VSEGIGKMVNLHTLSGIYGGDGIARELSALTQIKDLGVKRVSEDHASELFAAIKKMESLASLSLEAEECFFEETNCALFPELDAFSPPPLLQEFYLHGGL IEIPMWLASMENLTRLTLSFSFLWENPTSVLQLLPKLKHLNLWEAYRAKHIGKEFCNAGGFPALETLTIASQFLVEWTEIATGAFPSLRSLSFRCCLSLI FFLKACRTFPHFKSCIWTPCHQTLQGD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.008G187700 [exp]	0	1
					Potri.008G019900 [exp]	1.00	0.9074
AT2G38800			Plant calmodulin-binding prote...		Potri.003G201400 [exp]	2.00	0.9004
AT1G70630			Nucleotide-diphospho-sugar tra...		Potri.008G186800 [exp]	2.44	0.8988
AT1G19850	ARF	IAA24, ARF5, MP	MONOPTEROS, indole-3-acetic ac...		Potri.005G236700 [exp]	2.64	0.8951
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Potri.005G004600 [exp]	3.00	0.9021
AT4G33540			metallo-beta-lactamase family ...		Potri.008G085751 [exp]	5.19	0.8869
AT1G71960		ATABCG25, ABCG2...	Arabidopsis thaliana ATP-bindi...		Potri.019G083000 [exp]	5.83	0.8560
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.006G258100 [exp]	6.70	0.8659
AT1G78060			Glycosyl hydrolase family prot...		Potri.005G168400 [exp]	10.19	0.8721
AT2G31130			unknown protein		Potri.004G055300 [exp]	10.39	0.8741

Compare expression of checked genes

Potri.008G187700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.