Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70560 477 / 1e-168 CKRC1, WEI8, TAA1, sav3 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) AT1G23320 448 / 4e-157 TAR1 tryptophan aminotransferase related 1 (.1) AT4G24670 394 / 3e-135 TAR2 tryptophan aminotransferase related 2 (.1.2) AT1G34060 266 / 6e-85 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G34040 261 / 7e-83 ATMEPCT Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT2G13810 42 / 0.0007 EDTS5, ALD1 eds two suppressor 5, AGD2-like defense response protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G044500 [exp] 687 / 0 AT1G70560 504 / 4e-179 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Potri.012G083300 [exp] 405 / 2e-139 AT4G24670 489 / 1e-171 tryptophan aminotransferase related 2 (.1.2) Potri.T125108 [exp] 405 / 4e-139 AT4G24670 487 / 7e-171 tryptophan aminotransferase related 2 (.1.2) Potri.002G063800 [exp] 273 / 1e-87 AT1G34060 472 / 1e-164 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.002G064000 [exp] 258 / 1e-81 AT1G34060 514 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036846 [exp] 439 / 2e-153 AT1G70560 415 / 4e-144 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Lus10006199 [exp] 430 / 3e-150 AT1G70560 405 / 6e-141 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Lus10039944 [exp] 395 / 7e-136 AT4G24670 489 / 5e-172 tryptophan aminotransferase related 2 (.1.2) Lus10027678 [exp] 383 / 3e-132 AT4G24670 449 / 7e-158 tryptophan aminotransferase related 2 (.1.2) Lus10018088 [exp] 329 / 1e-105 AT1G60780 632 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10028695 [exp] 258 / 2e-81 AT1G34060 474 / 4e-165 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10007085 [exp] 238 / 9e-74 AT1G34060 456 / 5e-158 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10042084 [exp] 0 / 1 AT4G24670 190 / 5e-60 tryptophan aminotransferase related 2 (.1.2) Lus10042085 [exp] 0 / 1 ND 43 / 2e-08
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF04864 [poplar] [flax] Alliinase_C Allinase
Representative CDS sequence Show only first row Show all	>Potri.008G187800.1 pacid=42808463 polypeptide=Potri.008G187800.1.p locus=Potri.008G187800 ID=Potri.008G187800.1.v4.1 annot-version=v4.1 ATGGGTGGTTCAGAGAATGGAGCAACCGATAACCAAAATAAGCCCACCGAGACAAGCCTCTCACCAGATTCCATAATCAATCTAGATCAGGGCGATCCAA CGTTGTTCGAGCCATACTGGAAGAAGATGGGAGACAAGTGTACGCTGGTGATTGGAGGGTGTGATTTGATGAGTTATTTCAGTGATAGTAGCAACATTTG CTGGTTTTTGCAGCCACAACTTGGCGATGCCATAAAGGGACTGCATCGTGTTGTTGGAAATGCAGTCACCGACGGTCGCCACATCGTGGTTGGGACCGGT TCAACACAGCTCTTAATGGCTGCTCTATATGCTCTCTCTTCTCCTTCCGCTAGTCACCCCGTCAGTCTCGTGGCTGCTGCTCCTTATTACTCGGGATATA AGGATCAGGCAGAATTCCTGCGTTCAGGACTCTATAAATGGGAAGGAGATGCACATACCTTTGATAAGGATGGACCTTATATTGAGGTCGTAACCTCGCC AAATAACCCTGATGGTACTATCCGAGAAGCTGTGGTGAACCTCGGGGAAGGGAAGCTTGTGTATGACCTGGCCTACTACTGGCCACAATACACGCCCATT ACTCACCCTTTGGATCATGATATCATGTTGTTCACATTTTCCAAATGCACTGGACATGCTGGCTCCCGTATAGGCTGGGCACTTGTCAAGGATAAAGAGG TAGCTAGAAAGATGACCGAATACATGCAGATCAGCTCCATTGGTGTATCCAAAGAATCCCAGCTTCGAGCTGCCAAGATTCTTGGAGTACTCAGCGAAGG TTGTCAACACTTTAGGACTGCTGATTCAGAGAACTTCTTCGAGTATAGCCATAGAATTATGAGAGAAAGACGGGAGAGCCTGCAAAATGTTGTCAAAAAC AGTAAAATCTTCAGTCTGCCAAAGTTCCCACAAGATTACTGCAACTTCACCGGGAAGTACACAGATTCAAATCCCGCTTTTGCATGGTTGCACAGCAAGG AGGGTATAGACTGGGAGAGTCTTTTGCGAGAACATAAGATAATAGGAAGAAGCGGGGAGCGGTTTGGGGCTGATCCAAAATATGTCAGAATCAGTATGTT TAGTCCACCAGAAGCGTTTAACCTTTTCTTGGAGAGGTTATCAGCAATCATCGACAACACCAATGGAAATGTAGTGGGAGGAGAAGAAAGCTCGATCATC AAATAA
AA sequence Show only first row Show all	>Potri.008G187800.1 pacid=42808463 polypeptide=Potri.008G187800.1.p locus=Potri.008G187800 ID=Potri.008G187800.1.v4.1 annot-version=v4.1 MGGSENGATDNQNKPTETSLSPDSIINLDQGDPTLFEPYWKKMGDKCTLVIGGCDLMSYFSDSSNICWFLQPQLGDAIKGLHRVVGNAVTDGRHIVVGTG STQLLMAALYALSSPSASHPVSLVAAAPYYSGYKDQAEFLRSGLYKWEGDAHTFDKDGPYIEVVTSPNNPDGTIREAVVNLGEGKLVYDLAYYWPQYTPI THPLDHDIMLFTFSKCTGHAGSRIGWALVKDKEVARKMTEYMQISSIGVSKESQLRAAKILGVLSEGCQHFRTADSENFFEYSHRIMRERRESLQNVVKN SKIFSLPKFPQDYCNFTGKYTDSNPAFAWLHSKEGIDWESLLREHKIIGRSGERFGADPKYVRISMFSPPEAFNLFLERLSAIIDNTNGNVVGGEESSII K

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G70560		CKRC1, WEI8, TA...	WEAK ETHYLENE INSENSITIVE 8, S...		Potri.008G187800 [exp]	0	1
					Potri.019G102600 [exp]	3.31	0.8002
					Potri.009G113550 [exp]	13.85	0.7663
					Potri.009G084666 [exp]	18.70	0.7262
AT5G60700			glycosyltransferase family pro...		Potri.004G212000 [exp]	38.14	0.7548
AT1G73325			Kunitz family trypsin and prot...		Potri.019G124400 [exp]	40.62	0.7519
AT5G61890	AP2_ERF		Integrase-type DNA-binding sup...		Potri.012G108500 [exp]	44.22	0.7428
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.018G149300 [exp]	48.33	0.7494	CYP716.1
AT5G48230		EMB1276, ACAT2	EMBRYO DEFECTIVE 1276, acetoac...		Potri.014G168700 [exp]	58.63	0.7357
AT1G58120			unknown protein		Potri.002G104500 [exp]	59.68	0.7409
AT1G73325			Kunitz family trypsin and prot...		Potri.019G124750 [exp]	63.04	0.7381

Compare expression of checked genes

Potri.008G187800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.