Plant FIBer expression Database

Potri.008G187900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G10740 709 / 0 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
AT1G23330 657 / 0 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G044400
[exp]
824 / 0 AT1G10740 719 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Potri.016G114350
[exp]
223 / 9e-72 AT1G10740 203 / 1e-65 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Potri.004G029200
[exp]
207 / 1e-65 AT1G10740 188 / 2e-59 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013048
[exp]
740 / 0 AT1G10740 779 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Lus10029114
[exp]
736 / 0 AT1G10740 778 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Lus10030585
[exp]
735 / 0 AT1G10740 766 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Lus10030904
[exp]
733 / 0 AT1G10740 763 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Lus10030586
[exp]
322 / 6e-109 AT1G10740 356 / 1e-123 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
PFAM info
Representative CDS sequence
>Potri.008G187900.1 pacid=42805782 polypeptide=Potri.008G187900.1.p locus=Potri.008G187900 ID=Potri.008G187900.1.v4.1 annot-version=v4.1
ATGATAAGGTGGTGGGTTTCTGCTCTGCATTTAACAGAGCTATTTGTAAGCGCGGTAGTGCATTTGCTATTTGGGTTTTACATATTTAGCACAGCTTTGG
CTGGTGATCTTTCACAGGCTATGAATGAATGGTTTTCCAAGCCTAATGTGCATGTTGTTGTCAAAGAGGAGGAGACCAGAGAGACGACATCTTCATCAAC
AACGAAGACGACGACCAGCGTTGATGACTTGCCACCTATTGTGTTGGTTCATGGAATCTTTGGATTTGGCAAAGGGAGATTGGGAGGTTTATCGTATTTT
GCTGGAGCAGAGAAGAAAGATGAGAGGGTCCTGGTGCCTGATTTGGGGTCTCTAACGAGCATCTATGATAGGGCACGCGAATTATTCTATTATTTGAAAG
GTGGGCAAGTTGATTATGGTGAAGAACACAGCATGGCTTATGGCCACTCACAATTTGGACGGATTTATGAACAGGGGCACTATCCTGAATGGGATGAGGA
TCACCCTATTCACTTTGTTGGGCATTCTGCTGGGGCGCAGGTTGTTCGCGTACTGCAGCAAATGCTTGCTGACAAGGCATTTAAGGGGTATGAGAACACT
TCTGATAAATGGGTGCTAAGCCTCACCTCCGTGTCCGGAGCATTCAATGGGACTACGAGGACCTACTTAGACGGGATGCAGCCAGAAGATTGGAGAAACA
TGAAACCAATTTGCCTGCTTCAGTTCTGTCGCTTAGGAACAATAATTTATGATTGGCTTGACATTGCTTGGCTGAAGGCTTACTACAACTTTGGATTTGA
TCACTTCAACATTTCCTGGAAAAAAATGGGCATTTTTGGTCTTATTGACTGCCTGTCGGGGAATGCAGGACCCTTTGCTTCTGGAGATTGGATACTTCCT
GATCTTACAATTCAAGGGTCTATGCAACTCAACTGCCATTTACAAACCTTCCCTGATACGTACTATTTCAGCTATGCCACCAAACGCACTAAAAGAATCT
TCGGTATCACTGTTCCTTCAGGCATATTTGGAATCCACCCATTGCTTTTTATAAGAGTGTTGCAGATGAGCCAGTGGCGTCATCCTCCAGATGTCTTTCC
CCCTTATAAAGGATACAGGGATGAGGATTGGCAGGACAATGATGGAGCACTCAACACCATATCTATGACCCACCCTCGTATTCCAGTTGAACATCCAAGC
CATTTTGTTGGGCATGATTCGGAGTGCCAACCCTTGCAGCCAGGAATATGGTATTACAAGATTGTGGAAGGTGATCACATATTGTTCATTGTGAATAGGG
ATAGAGCAGGAATTCAATTCGATATGATATATGATAGTATTTTTGAGCGTTGCAGAAAATATGCCTGTAGGAAGAGTCGACAAACGTTACCAAACGAAAT
CCATCAATAG
AA sequence
>Potri.008G187900.1 pacid=42805782 polypeptide=Potri.008G187900.1.p locus=Potri.008G187900 ID=Potri.008G187900.1.v4.1 annot-version=v4.1
MIRWWVSALHLTELFVSAVVHLLFGFYIFSTALAGDLSQAMNEWFSKPNVHVVVKEEETRETTSSSTTKTTTSVDDLPPIVLVHGIFGFGKGRLGGLSYF
AGAEKKDERVLVPDLGSLTSIYDRARELFYYLKGGQVDYGEEHSMAYGHSQFGRIYEQGHYPEWDEDHPIHFVGHSAGAQVVRVLQQMLADKAFKGYENT
SDKWVLSLTSVSGAFNGTTRTYLDGMQPEDWRNMKPICLLQFCRLGTIIYDWLDIAWLKAYYNFGFDHFNISWKKMGIFGLIDCLSGNAGPFASGDWILP
DLTIQGSMQLNCHLQTFPDTYYFSYATKRTKRIFGITVPSGIFGIHPLLFIRVLQMSQWRHPPDVFPPYKGYRDEDWQDNDGALNTISMTHPRIPVEHPS
HFVGHDSECQPLQPGIWYYKIVEGDHILFIVNRDRAGIQFDMIYDSIFERCRKYACRKSRQTLPNEIHQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G10740 alpha/beta-Hydrolases superfam... Potri.008G187900
[exp]
0 1
AT5G64080 AtXYP1 xylogen protein 1, Bifunctiona... Potri.001G210100
[exp]
3.46 0.8080
AT1G10740 alpha/beta-Hydrolases superfam... Potri.010G044400
[exp]
6.00 0.7650
AT4G39980 DHS1 3-deoxy-D-arabino-heptulosonat... Potri.005G073300
[exp]
8.18 0.8576
AT5G07990 CYP75B1, D501, ... TRANSPARENT TESTA 7, CYTOCHROM... Potri.001G167900
[exp]
9.16 0.7975
AT2G32990 ATGH9B8 glycosyl hydrolase 9B8 (.1) Potri.014G157600
[exp]
9.16 0.7983
AT3G61460 BRH1 brassinosteroid-responsive RIN... Potri.010G133300
[exp]
15.81 0.7884
AT1G23000 Heavy metal transport/detoxifi... Potri.008G128400
[exp]
16.61 0.8129
AT3G22250 UDP-Glycosyltransferase superf... Potri.016G019400
[exp]
19.79 0.7689
AT3G61460 BRH1 brassinosteroid-responsive RIN... Potri.010G133200
[exp]
24.26 0.7737
AT1G17420 ATLOX3, LOX3 Arabidopsis thaliana lipoxygen... Potri.003G067600
[exp]
27.11 0.7587 Pt-LOX3.2

Potri.008G187900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.