Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10760 1781 / 0 GWD1, GWD, SOP1, SOP, SEX1 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1) AT4G24450 1119 / 0 PWD, GWD3, ATGWD2 "phosphoglucan, water dikinase", phosphoglucan, water dikinase (.1) AT5G26570 160 / 3e-39 ATGWD3, OK1, PWD PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G044100 [exp] 2536 / 0 AT1G10760 1875 / 0.0 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1) Potri.002G234500 [exp] 171 / 1e-42 AT5G26570 1561 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Potri.014G147900 [exp] 165 / 7e-41 AT5G26570 1509 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Potri.010G092900 [exp] 45 / 0.0007 AT1G69830 1236 / 0.0 alpha-amylase-like 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013044 [exp] 2105 / 0 AT1G10760 1910 / 0.0 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1) Lus10029118 [exp] 2085 / 0 AT1G10760 1889 / 0.0 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1) Lus10032829 [exp] 1136 / 0 AT4G24450 1571 / 0.0 "phosphoglucan, water dikinase", phosphoglucan, water dikinase (.1) Lus10037434 [exp] 173 / 2e-43 AT5G26570 1508 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Lus10041275 [exp] 173 / 2e-43 AT5G26570 1353 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Lus10030793 [exp] 47 / 0.0001 AT1G69830 1173 / 0.0 alpha-amylase-like 3 (.1) Lus10013270 [exp] 45 / 0.0005 AT1G69830 1180 / 0.0 alpha-amylase-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0179 [poplar] [flax] ATP-grasp PF01326 [poplar] [flax] PPDK_N Pyruvate phosphate dikinase, AMP/ATP-binding domain
Representative CDS sequence Show only first row Show all	>Potri.008G188150.5 pacid=42807122 polypeptide=Potri.008G188150.5.p locus=Potri.008G188150 ID=Potri.008G188150.5.v4.1 annot-version=v4.1 ATGAGTAATAGCAACATATGGCATCATAAATTATTCCACTACCAGAGTTTGCTTCGTCCAGCTAGTTTAGAGCATCGAAGCAAGCTCGATTCTTCTGGAA TTGTTGCAAAATATTTGTTTAAAGCTGCTCGTAGGTCGTCCAGCTTTTCTGGAAACGATTTGAAACTGAGGAGATCAGAATCAGGCATCGGAGGATCACG CCGCTCTGTTATTTTCACTCCGCGAGCTGTCTTAGCCATGGAGCCCTCTTCTGAGCAGCTTGCAGGAAAATTCAACCTTGATGGAAATATTGAAATGCAG GTTTTTGTCAGCAATTCCTCGGCTGCATCCATCGCACAAATAAATATTCAAATCACTTATAGTAGTGATTCATTGCTCCTACACTGGGGTGCAATACTTG ATAGAAAGGAAAAGTGGGTGCTTCCTTCTCGTCAACCAAATGGAACAACAAATTATAAGAACAGAGCCCTCCGATCTCCTTTTATAAAGTCTGGTTCCAA TTCTTACATCAGCATAGCGATTGATGATCCTGCAACGCAAGCTATAGAGTTTCTTGTAGTTGATGAAGCAAAGAATAAGTGGTTTAAGGATAATGGCCAG AACTTTCATATCAAGTTACCCATGAGAGAGAAGTTGATAATTCCTAATGTCTCAGTTCCTGAAGAACTTGTACAGATTCAAGCATATCTAAGGTGGGAAA GAAAGGGTAAACAAATGTATACCCCTGAGCAAGAGAAGGAGGAATATGAATCTGCTCGCTTTGAGCTATTGGAGGAAGTAGCCAGAGGTACTTCCATTGA GGATCTCCGAGCAAAACTAACAAACAAAAATGATAGATGTGAAATTAAGGAGCCATCTGTCTCTAAAATAAAAAACAGAATACCGGATGATCTTGTGCAA ATACAAGCTTATATCAGATGGGAAAAGGCAGGGAAACCCAATTATTCTCCGGAGCAGCAACTGAGGGAATTTGAAAAGGCAAGAGAGGAGTTGCAAACTG AACTGTACAAAGGTGTCTCTATCGATGAGATTCAGAAGAAGATTACTAAAGGAGAAATCAAGACTGAGGAGTCAAAGCAACTTCAAAACAAAAGGTATTT TAGCAATGAAAGAATTCAGCGCAAAAAGTGGGACATAATGCAGCTTGTCAACAAACATGCTGCTAAATCTGTAGAGGACAAGGTTTCTAAATCTGCAGAG GGAAAAGCTTCAGTGGAATCAAAAGTCTTGAAGGCTGTTGAGCTTTTTGCTAAGAAGAAGGAAGAACATGATGGTGGTGCTGTGCTGAACAAGAAAATCT TTAAGCTTGCTGATAAGGAACTTTTGGTACTTGTAACCAAGCCTGGTGGTAAGGTGAAGGTTCATTTGGCCACTGATTTGGAACAGCCAGTTACTCTTCA CTGGGCTTTATCTAAAAAGGCTGGAGAATGGTTGGAGCCACCTCCAAATGTGTTGCCTCCTGGTTCGATTTCTCTTCAGGTGGCTGCTGAAACACAGCTT AAAAATGAGTCCTCTACTGAATTTTCATACCAGGTGCAATCTTTTGAAATGGAGATTGAAAAAGATACTTTCATAGGGATGCCATTTGTCCTTTTGTCTA ATGGAAGATGGATAAAGAATAATGGCTCAGACTTTTATATTGAATTTGGCAGAGGATCTAAGCATGTCCAAAAGGATGCTGGTGATGGCATAGGTACTGC CAGGGCGTTGTTGGATAAAATTGCAAAAATGGAGAGTGAGGCACAGAAGTCTTTCATGCACAGATTCAATATTGCGGCAGACTTGATGGATCAAGCCAAG GATGCTGGGGAATTGGGTCTTGCTGGGATCTTTGTCTGGATGCGCTTTATGGCCACAAGGCAGCTCATATGGAATAAAAACTACAACGTCAAACCACGTG AAATCAGTAAAGCTCAGGATAGGCTTACAAACTTGGTTCAGGATATTTATGCAAACAATCCACAGCATCGGGAGCTCTTGAGAATGATTATGTCCACTGT TGGTCGAGGAGGTGAAGGGGATGTGGGACAACGTATTCGGGATGAAATCCTAGTGATACAGAGAAACAATGATTGCAAAGGTGGAATGATGGAGGAATGG CATCAGAAGTTGCATAATAACACCAGTCCTGATGATGTCATAATCTGCCAGGCATTAATTGATTGCATTAAAAGCGACTTTGACATCAGTGTGTACTGGA AAACTTTGAATGATAATGGAATAACAAAAGAGAGACTTTTAAGTTATGATCGTGCCATCCATTCCGAACCAAATTTCAGGAGAGATCAAAGGGATGGTCT CTTGCGTGATCTTGGAAACTATATGAGGACTTTGAAGGCAGTTCATTCAGGTGCAGATCTTGACTCTGCTATTGGAAATTGTATGGGCTACAGATCTGAG GGTCAAGGCTTCATGGTTGGAGTGCAAACAAATCCCGTTCCAGGCTTGCCATCTGGTTTCCCAGAATTGCTTAAATTTCTACTAGAACACGTTGAAGATA AGAATGTAGAAGCACTTCTTGAGGGTTTGCTAGAGGCTCGTCAGGAGCTTAGAACTCTTCTATTTAAGTCCAAGGATCGTCTTAAGGATCTTTTATTTTT GGATATTGCACTTGACTCCACTGTTAGGACAGTTATTGAACGGGGTTATGAGGAATTAAACAATGCTAGACCAGAGAAAATTATGTACTTCATCACTTTG GTTCTTGAAAATCTCGCACTTTCATCAGATGATAATGAAGATCTTATTTACTGCTTGAAGGGATGGAAACTTGCACTAAGTATGTCAAATAGCAAAAGTG ACCACTGGGCGTTATTTTCAAAATCAGTCCTTGACAGAACTCGCCTTGCCCTTGCTTGCAAAGCAGAATGGTACCAGAATGTTTTGCAACCATCAGCGGA GTATCTTGGATCATTGCTTGGAGTGGACCAGTGGGCTCTGAACATATTCACTGAAGAAATCATCCGTGCTGGATCAGCTGCAGCATTATCTACACTTCTT AATCGACTTGATCCAATTCTTCGGCAGACTGCTCATCTAGGAAGCTGGCAGGTTATTAGCCCAGTTGAAGCTGTTGGATATGTTGTTGCTGTGGATGAGT TGCTCACTGTGCAGAATAAAACTTACAAGTTCCCAACAATCTTAGTTGCAAAACGAGTAAAAGGAGAAGAAGAAATTCCGGATGGTACAGTTGCTGTGCT GACACCCGATATGCCTGATGTGCTATCTCATGTTTCTGTGCGAGCAAGAAACAGCAAGGTTTGCTTTGCTACATGCTTTGATCCTGATATTCTGGCCGAC CTTAAAGCATATGAAGGGAAATTGTTGCATCTGAAACCAACTTCGGCAGATATAGCATATAGTGAACTAAAGGAGGGCAAGCTAGCAGATTCAAGTTCAA CTAACTTGAAAGAAGTCAGTCCTTCACCTATAAAGTTGGTCAGAAAGCAGTTCAGAGGCAGATATGCCATATCTTCTGAGGAGTTTAGCAGTGAAATGGT TGGTGCCAAATCACGCAACATCTCATATTTGAAAGGAAAAGTGCCGTCTTGGATCGGGATTCCTACATCAGTTGCTTTACCATTTGGAGTTTTTGAGAAG GTTCTAAACGAGGATTTGAATTGGGAAGTGGCCAATAAGTTGCAACTGTTGAAGAAAAACTTGGCAGAAGAGTCTAGTGCTCTTGGACAGATTCGCCATA CAGTTTTACAGCTGGCTGCACCACCACAGTTGGTCCAAGAGCTGAAGACCAAGATGCAAAGTTCTGGGATGCCATGGCCTGGTGACGAAGGTGAACGAAG ATGGGAGCAAGCATGGATGGCTATAAAGAAGGTCTGGGCTTCAAAATGGAATGAAAGGGCATACTTCAGCACAAGAAAAGTAAAGTTAGACCATGATTAT CTCTGCATGGCTGTCCTAGTTCAGGAAGTAATAAATGCTGATTATGCATTTGTTATTCATACAACCAATCCATCTTCGGGGGATTCATCTGAGATATATG CTGAGGTGGTGAAGGGTCTTGGAGAAACTCTAGTTGGAGCTTATCCTGGCCGTGCATTGAGTTTTATCTGCAAGAAAAATGATTTAAACACTCCTCTGGT GTTGGGTTACCCGAGCAAACCCATTGGGCTTTTTATAAAACGTTCTATTATCTTCCGATCTGACTCCAATGGTGAAGATCTAGAAGGTTATGCCGGTGCA GGCCTTTATGATAGTGTGCCAATGGATGAAGAAGAGAAGGTTGTGCTCGACTATTCATCTGATCCATTGATCACTGATGATAACTTTCGACGAACAATCC TCTCTAGCATCGCTCGTGCAGGAAGTGCAATTGAAGAGCTGTATGGATCTCCTCAAGACATTGAAGGTGTAATACGTGATGGTAAGGTCTATGTAGTTCA GACAAGACCCCAGATGTGA
AA sequence Show only first row Show all	>Potri.008G188150.5 pacid=42807122 polypeptide=Potri.008G188150.5.p locus=Potri.008G188150 ID=Potri.008G188150.5.v4.1 annot-version=v4.1 MSNSNIWHHKLFHYQSLLRPASLEHRSKLDSSGIVAKYLFKAARRSSSFSGNDLKLRRSESGIGGSRRSVIFTPRAVLAMEPSSEQLAGKFNLDGNIEMQ VFVSNSSAASIAQINIQITYSSDSLLLHWGAILDRKEKWVLPSRQPNGTTNYKNRALRSPFIKSGSNSYISIAIDDPATQAIEFLVVDEAKNKWFKDNGQ NFHIKLPMREKLIIPNVSVPEELVQIQAYLRWERKGKQMYTPEQEKEEYESARFELLEEVARGTSIEDLRAKLTNKNDRCEIKEPSVSKIKNRIPDDLVQ IQAYIRWEKAGKPNYSPEQQLREFEKAREELQTELYKGVSIDEIQKKITKGEIKTEESKQLQNKRYFSNERIQRKKWDIMQLVNKHAAKSVEDKVSKSAE GKASVESKVLKAVELFAKKKEEHDGGAVLNKKIFKLADKELLVLVTKPGGKVKVHLATDLEQPVTLHWALSKKAGEWLEPPPNVLPPGSISLQVAAETQL KNESSTEFSYQVQSFEMEIEKDTFIGMPFVLLSNGRWIKNNGSDFYIEFGRGSKHVQKDAGDGIGTARALLDKIAKMESEAQKSFMHRFNIAADLMDQAK DAGELGLAGIFVWMRFMATRQLIWNKNYNVKPREISKAQDRLTNLVQDIYANNPQHRELLRMIMSTVGRGGEGDVGQRIRDEILVIQRNNDCKGGMMEEW HQKLHNNTSPDDVIICQALIDCIKSDFDISVYWKTLNDNGITKERLLSYDRAIHSEPNFRRDQRDGLLRDLGNYMRTLKAVHSGADLDSAIGNCMGYRSE GQGFMVGVQTNPVPGLPSGFPELLKFLLEHVEDKNVEALLEGLLEARQELRTLLFKSKDRLKDLLFLDIALDSTVRTVIERGYEELNNARPEKIMYFITL VLENLALSSDDNEDLIYCLKGWKLALSMSNSKSDHWALFSKSVLDRTRLALACKAEWYQNVLQPSAEYLGSLLGVDQWALNIFTEEIIRAGSAAALSTLL NRLDPILRQTAHLGSWQVISPVEAVGYVVAVDELLTVQNKTYKFPTILVAKRVKGEEEIPDGTVAVLTPDMPDVLSHVSVRARNSKVCFATCFDPDILAD LKAYEGKLLHLKPTSADIAYSELKEGKLADSSSTNLKEVSPSPIKLVRKQFRGRYAISSEEFSSEMVGAKSRNISYLKGKVPSWIGIPTSVALPFGVFEK VLNEDLNWEVANKLQLLKKNLAEESSALGQIRHTVLQLAAPPQLVQELKTKMQSSGMPWPGDEGERRWEQAWMAIKKVWASKWNERAYFSTRKVKLDHDY LCMAVLVQEVINADYAFVIHTTNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFICKKNDLNTPLVLGYPSKPIGLFIKRSIIFRSDSNGEDLEGYAGA GLYDSVPMDEEEKVVLDYSSDPLITDDNFRRTILSSIARAGSAIEELYGSPQDIEGVIRDGKVYVVQTRPQM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10760		GWD1, GWD, SOP1...	STARCH EXCESS 1, Pyruvate phos...		Potri.008G188150 [exp]	0	1
AT5G50780			Histidine kinase-, DNA gyrase ...		Potri.012G102800 [exp]	5.65	0.8040
AT3G42170			BED zinc finger ;hAT family di...		Potri.016G026066 [exp]	8.48	0.7845
AT3G12380		ATARP5	actin-related protein 5 (.1.2)		Potri.010G202000 [exp]	12.00	0.7129	ARP909
AT1G27520			Glycosyl hydrolase family 47 p...		Potri.012G076600 [exp]	14.96	0.7313
AT1G30410		ATMRP13, ABCC12	ATP-binding cassette C12, mult...		Potri.011G043100 [exp]	15.71	0.7420	Pt-ATMRP12.3
AT3G24320		CHM1, ATMSH1, C...	CHLOROPLAST MUTATOR, MUTL prot...		Potri.010G065000 [exp]	24.65	0.7443	CHM.1
					Potri.004G200600 [exp]	26.09	0.6421
AT5G51290			Diacylglycerol kinase family p...		Potri.004G233300 [exp]	27.11	0.7746
AT1G17550		HAB2	homology to ABI2 (.1)		Potri.001G198501 [exp]	27.11	0.6813
AT1G26170			ARM repeat superfamily protein...		Potri.008G109300 [exp]	29.32	0.7725

Compare expression of checked genes

Potri.008G188150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.