Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26610 545 / 0 Pectin lyase-like superfamily protein (.1) AT1G10640 367 / 2e-122 Pectin lyase-like superfamily protein (.1) AT1G60590 353 / 1e-116 Pectin lyase-like superfamily protein (.1) AT5G14650 337 / 7e-112 Pectin lyase-like superfamily protein (.1) AT1G56710 289 / 5e-93 Pectin lyase-like superfamily protein (.1) AT1G48100 289 / 2e-92 Pectin lyase-like superfamily protein (.1) AT4G01890 271 / 8e-86 Pectin lyase-like superfamily protein (.1) AT1G02460 258 / 1e-80 Pectin lyase-like superfamily protein (.1) AT1G70500 255 / 1e-79 Pectin lyase-like superfamily protein (.1) AT1G23460 248 / 6e-77 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G044001 [exp] 760 / 0 AT3G26610 579 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G042100 [exp] 379 / 5e-127 AT1G60590 675 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G189200 [exp] 378 / 1e-126 AT1G60590 644 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G346800 [exp] 358 / 3e-119 AT5G14650 506 / 5e-178 Pectin lyase-like superfamily protein (.1) Potri.002G190600 [exp] 293 / 4e-94 AT1G02460 582 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.005G005500 [exp] 293 / 5e-94 AT1G02460 583 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.013G005000 [exp] 290 / 9e-93 AT1G02460 561 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G115700 [exp] 290 / 4e-92 AT1G02460 593 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G152000 [exp] 288 / 6e-92 AT1G48100 603 / 0.0 Pectin lyase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029121 [exp] 599 / 0 AT3G26610 566 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10030886 [exp] 374 / 1e-124 AT1G10640 658 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10030604 [exp] 372 / 3e-124 AT1G60590 665 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10029140 [exp] 372 / 4e-124 AT1G60590 660 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10013025 [exp] 358 / 5e-119 AT1G10640 634 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10009994 [exp] 270 / 5e-85 AT1G02460 606 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10017109 [exp] 270 / 5e-85 AT1G48100 647 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10037834 [exp] 270 / 7e-85 AT1G48100 649 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038059 [exp] 265 / 1e-82 AT1G02460 542 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10030602 [exp] 252 / 8e-78 AT1G23460 624 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF00295 [poplar] [flax] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Potri.008G188300.1 pacid=42807259 polypeptide=Potri.008G188300.1.p locus=Potri.008G188300 ID=Potri.008G188300.1.v4.1 annot-version=v4.1 ATGAAGAGCATCAGGAACTCATCTGTTCGATTTTTTCTTTTTGTTGTAGTAGCTGTCTTCATTACATTTGCCATGATTTCTGTAGAGGCAAGAAAGCATC ACAGCAACAGAAATAAACCTCACAAGCACCTTAAAGACAAGGGCAGCAATGGCCACAATGCTCCAGACCCAGCTACAAATATTCCAGGCCCTGCCCCAGC CCCTCTTCCTTACTATGGTTCTTATCCTACACATTCCATCATTTTTGACGTTTTGTCATTTGGAGCCAAGGGTGATGGAGTCTCAGATGATTCAAAGGCA CTTTTAGCAGCATGGAAAGCTGCGTGCAAGGTATCTGGGGCTGTAGTGGAAATCCCGGCGGAATTCAAGTTCCTCATCAAGCCCATAACTCTCCAAGGTC CATGCATGCCTCACCTTGTACTTGAGGTAGATGGCATTCTCTTAGCTCCACCTCAAGTAGGTGCCTGGCCTAAATCCGGCTTGTTTCAGTGGCTAAACTT CAAATGGGTTCATGACTTCACCATTCAAGGCACTGGAAAACTTGATGGTCAAGGATCTGCCTGGTGGAGTCCCTCTGGAGTCTACTATATTCAGAAGAGG TCCAAACACAATCCAGATATGAAAGTACCAACCGCTTTGAGATTCTATGACAGCCATAATGTTACAGTTCGCGACATCAAAATCATGAACAGCCCTCAAT GCCATCTCAAATTTGACAGCTCGAGTGGGATCAAAGTCAATAATATCACGATTGATTCACCAGAGAATAGTCCAAATACTGACGGCATTCACCTGCAGAA TACAAAAGATGTAGAAATTCAGCACTCTAATATTGGATGCGGGGATGACTGTGTATCAATACAAACTGGTTGCTCTAATATCCATGTCCATCACATTAAC TGTGGACCTGGACATGGTATAAGTCTAGGAGGACTTGGAAAGGATAAAAGTGTTGCCTGTGTCTCGGATATTGTTGTCGAGAAAATCTCACTACAAAATA CTTTGTCCGGAGTTAGAATAAAGACATGGCAGGGAGGTGTTGGATCGGTAAAGAACGTGACATTTTCCAGTATTGAAGTATCAGATGTGAAGTATCCTGT AATAATTGACCAGTTCTATTGTGACAAGAAAATCTGCAAGAATCAAACAGAAGCTGTGGCAATATCTGGTGTTAAATATGACAGAATCATAGGGAGTTAC TCAGTGCAACCCCTTCATCTTGCATGTAGCAATGACGTGCCTTGCACCGATGTTGATCTGATTGATATTCAGTTGAAGCCCAGCTCCAATGGCTTTCGAG GTTTTCGGCAGGCTCTGTGCTGGAACTCCTATGGGAAATCACAAGCACCCCTTCTTCCTTCAAGCATAGACTATTGCTTGAGAACCGAGAGTAGGTCTGT TAAGAGAATAGCAAGGTCGCATACTGAACATATTTGTCCGCCATGA
AA sequence Show only first row Show all	>Potri.008G188300.1 pacid=42807259 polypeptide=Potri.008G188300.1.p locus=Potri.008G188300 ID=Potri.008G188300.1.v4.1 annot-version=v4.1 MKSIRNSSVRFFLFVVVAVFITFAMISVEARKHHSNRNKPHKHLKDKGSNGHNAPDPATNIPGPAPAPLPYYGSYPTHSIIFDVLSFGAKGDGVSDDSKA LLAAWKAACKVSGAVVEIPAEFKFLIKPITLQGPCMPHLVLEVDGILLAPPQVGAWPKSGLFQWLNFKWVHDFTIQGTGKLDGQGSAWWSPSGVYYIQKR SKHNPDMKVPTALRFYDSHNVTVRDIKIMNSPQCHLKFDSSSGIKVNNITIDSPENSPNTDGIHLQNTKDVEIQHSNIGCGDDCVSIQTGCSNIHVHHIN CGPGHGISLGGLGKDKSVACVSDIVVEKISLQNTLSGVRIKTWQGGVGSVKNVTFSSIEVSDVKYPVIIDQFYCDKKICKNQTEAVAISGVKYDRIIGSY SVQPLHLACSNDVPCTDVDLIDIQLKPSSNGFRGFRQALCWNSYGKSQAPLLPSSIDYCLRTESRSVKRIARSHTEHICPP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26610			Pectin lyase-like superfamily ...		Potri.008G188300 [exp]	0	1
AT3G49190			O-acyltransferase (WSD1-like) ...		Potri.007G139600 [exp]	3.16	0.9698
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Potri.014G180300 [exp]	7.48	0.9642	CER1.1
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Potri.005G242800 [exp]	10.81	0.9726
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Potri.002G223200 [exp]	19.59	0.9671
					Potri.002G217100 [exp]	23.97	0.9388
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Potri.006G243700 [exp]	26.92	0.9629	Pt-RD22.1
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Potri.006G243600 [exp]	29.59	0.9627
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Potri.007G103800 [exp]	31.85	0.9617	GA20ox5
AT3G01550		ATPPT2	phosphoenolpyruvate (pep)/phos...		Potri.001G347300 [exp]	35.77	0.9609
AT4G15630			Uncharacterised protein family...		Potri.008G205100 [exp]	37.46	0.9608

Compare expression of checked genes

Potri.008G188300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.