Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23360 354 / 2e-124 MENG S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT5G57300 92 / 1e-21 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT2G41040 59 / 6e-10 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G54400 57 / 2e-09 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G18000 53 / 6e-08 XPL1, NMT1, XIPOTL1, PEAMT XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G15530 52 / 1e-07 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G48600 50 / 7e-07 AtPMEAMT phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G73600 49 / 2e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G63410 47 / 7e-06 VTE3, APG1, IEP37, E37 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G13710 46 / 1e-05 CPH, SMT1 CEPHALOPOD, sterol methyltransferase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G088400 [exp] 97 / 8e-24 AT5G57300 470 / 4e-169 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.010G043601 [exp] 77 / 1e-18 AT1G23360 63 / 9e-14 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.011G128300 [exp] 62 / 8e-11 AT5G54400 450 / 1e-160 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G405200 [exp] 55 / 1e-08 AT5G54400 396 / 1e-139 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G245800 [exp] 52 / 1e-07 AT1G20330 667 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Potri.002G016300 [exp] 52 / 2e-07 AT1G20330 647 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Potri.013G077000 [exp] 49 / 2e-06 AT1G64970 441 / 8e-156 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Potri.006G060400 [exp] 49 / 2e-06 AT2G41040 461 / 5e-164 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G159400 [exp] 48 / 3e-06 AT3G63410 461 / 6e-164 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013038 [exp] 397 / 3e-141 AT1G23360 369 / 3e-130 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10029124 [exp] 329 / 8e-114 AT1G23360 298 / 8e-102 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10011441 [exp] 107 / 3e-27 AT5G57300 475 / 2e-171 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10000179 [exp] 77 / 6e-17 AT5G57300 342 / 3e-120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10037553 [exp] 77 / 2e-16 AT5G57300 359 / 1e-125 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10038599 [exp] 62 / 7e-11 AT5G54400 455 / 8e-163 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10037890 [exp] 62 / 8e-11 AT5G54400 449 / 2e-160 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10009056 [exp] 50 / 1e-06 AT1G73600 773 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10018010 [exp] 50 / 1e-06 AT3G18000 843 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10031348 [exp] 47 / 6e-06 AT3G18000 843 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13847 [poplar] [flax] Methyltransf_31 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.008G188600.1 pacid=42806491 polypeptide=Potri.008G188600.1.p locus=Potri.008G188600 ID=Potri.008G188600.1.v4.1 annot-version=v4.1 ATGGCATCACTTCAGCTTCAGCTAAGTTTTGGTTACCAATCTTCATCCTGTCGACACCTTCCCATTTCCACCTTCTCATACCCATCCATTCGTTGCGCTA ATGATCGCCAGCTGCTTTTTAACCGCATTGCTCCTGTCTATGATAACTTGAATGATTTGTTGAGTTTGGGTCAGCATCGTATCTGGAAACGCATGGCCGT ATCCTGGACTGGAGCGAAATTGGGAGACTGCGTGTTGGATCTGTGTTGTGGAAGTGGGGATTTAGCATTTCTCTTGTCTGAAAAAGTTGGCTCCAATGGC AAGGTGAGTGGTCTCGATTTCTCAAAGGAGCAGCTATTGATGGCTTCATCACGGCAACATTTGCTTTCAAAGGCCTGCTACAAGAACATCGAGTGGATTG AGGGTGATGCTACAGAATTGCCCTTTCCGGATTGCTACTTTGATGCTATTACCATGGGTTATGGGCTACGAAATGTGGTGGATAAGCGGAAGGCCGTGCA GGAGATGTTTCGAGTACTGAAACCAGGTTCTAAAGCATCAGTGCTTGATTTTAATAAAAGCACTCAACCATTTGTTGCTTCATTTCAGGAGTGGATGATT GACAATGCTGTTGTCCCTGTGGCAACTGCATATGGTCTTGCGAAGGAGTATGAATATTTGAAGGGCTCAATCAGAGAATTTTTAACAGGGAATGAGTTGG AAGAACTTGCTCTGGAAGCAGGATTTTCTACTGCTAAACATTATGAGATTAGTGGAGGCCTAATGGGGAATCTAGTAGCCACACGTTAG
AA sequence Show only first row Show all	>Potri.008G188600.1 pacid=42806491 polypeptide=Potri.008G188600.1.p locus=Potri.008G188600 ID=Potri.008G188600.1.v4.1 annot-version=v4.1 MASLQLQLSFGYQSSSCRHLPISTFSYPSIRCANDRQLLFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWTGAKLGDCVLDLCCGSGDLAFLLSEKVGSNG KVSGLDFSKEQLLMASSRQHLLSKACYKNIEWIEGDATELPFPDCYFDAITMGYGLRNVVDKRKAVQEMFRVLKPGSKASVLDFNKSTQPFVASFQEWMI DNAVVPVATAYGLAKEYEYLKGSIREFLTGNELEELALEAGFSTAKHYEISGGLMGNLVATR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G23360		MENG	S-adenosyl-L-methionine-depend...		Potri.008G188600 [exp]	0	1
AT3G23600			alpha/beta-Hydrolases superfam...		Potri.008G201400 [exp]	1.00	0.8187
AT2G02410			unknown protein		Potri.003G046600 [exp]	2.82	0.7858
AT1G17330			Metal-dependent phosphohydrola...		Potri.007G072000 [exp]	3.46	0.7381
AT5G51100		FSD2	Fe superoxide dismutase 2 (.1)		Potri.012G112301 [exp]	4.58	0.7142
AT5G19460		ATNUDT20	nudix hydrolase homolog 20 (.1...		Potri.006G157800 [exp]	15.42	0.6733
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Potri.004G074100 [exp]	17.49	0.6917
AT5G48870		SAD1	SUPERSENSITIVE TO ABA AND DROU...		Potri.009G072500 [exp]	20.90	0.6578	SAD1.1
AT5G26751		ATSK11 ,SK 11	ARABIDOPSIS THALIANA SHAGGY-RE...		Potri.013G004700 [exp]	21.67	0.6240	MSK.4
AT3G12180			Cornichon family protein (.1)		Potri.006G057300 [exp]	25.03	0.6368
AT1G66520		PDE194	pigment defective 194, formylt...		Potri.017G123300 [exp]	25.47	0.6810

Compare expression of checked genes

Potri.008G188600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.