Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60800 931 / 0 NIK3 NSP-interacting kinase 3 (.1) AT3G25560 778 / 0 NIK2 NSP-interacting kinase 2 (.1.2.3) AT5G16000 761 / 0 NIK1 NSP-interacting kinase 1 (.1) AT2G23950 664 / 0 Leucine-rich repeat protein kinase family protein (.1) AT4G30520 659 / 0 SARK SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE, Leucine-rich repeat protein kinase family protein (.1) AT5G45780 639 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G71830 607 / 0 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1) AT1G34210 590 / 0 ATSERK2, SERK2 somatic embryogenesis receptor-like kinase 2 (.1) AT4G33430 568 / 0 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT2G13790 552 / 0 BAK7, BKK1, ATSERK4 BAK1-LIKE 1, BRI1- ASSOCIATED KINASE 7, somatic embryogenesis receptor-like kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G043200 [exp] 1142 / 0 AT1G60800 925 / 0.0 NSP-interacting kinase 3 (.1) Potri.008G110300 [exp] 798 / 0 AT3G25560 918 / 0.0 NSP-interacting kinase 2 (.1.2.3) Potri.004G108200 [exp] 791 / 0 AT5G16000 1006 / 0.0 NSP-interacting kinase 1 (.1) Potri.010G134100 [exp] 786 / 0 AT3G25560 927 / 0.0 NSP-interacting kinase 2 (.1.2.3) Potri.017G108000 [exp] 785 / 0 AT5G16000 995 / 0.0 NSP-interacting kinase 1 (.1) Potri.006G179400 [exp] 680 / 0 AT2G23950 889 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G059100 [exp] 662 / 0 AT5G45780 837 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G101300 [exp] 661 / 0 AT4G30520 837 / 0.0 SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE, Leucine-rich repeat protein kinase family protein (.1) Potri.011G068700 [exp] 657 / 0 AT5G45780 819 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030898 [exp] 1025 / 0 AT1G60800 931 / 0.0 NSP-interacting kinase 3 (.1) Lus10030591 [exp] 1018 / 0 AT1G60800 929 / 0.0 NSP-interacting kinase 3 (.1) Lus10019145 [exp] 788 / 0 AT5G16000 935 / 0.0 NSP-interacting kinase 1 (.1) Lus10034413 [exp] 781 / 0 AT5G16000 937 / 0.0 NSP-interacting kinase 1 (.1) Lus10034350 [exp] 780 / 0 AT5G16000 1018 / 0.0 NSP-interacting kinase 1 (.1) Lus10005103 [exp] 776 / 0 AT5G16000 998 / 0.0 NSP-interacting kinase 1 (.1) Lus10019963 [exp] 681 / 0 AT2G23950 907 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015484 [exp] 679 / 0 AT2G23950 910 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10007292 [exp] 621 / 0 AT5G45780 801 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10029241 [exp] 584 / 0 AT5G45780 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.008G188800.2 pacid=42806510 polypeptide=Potri.008G188800.2.p locus=Potri.008G188800 ID=Potri.008G188800.2.v4.1 annot-version=v4.1 ATGGAAAGTAGGCGGAGTTTTGGGTTCTGCACAGTGGTATTTCTGGTTTTGGCATTGATGGAGATTTCTTCTGCCACTCTTTCTCCTACTGGTATAAACT TTGAAGTGGTAGCTTTGGTGGCCATAAAAACTGCTCTACTCGACCCATATAATGTTCTGGAGAATTGGGATATCAATTCTGTTGATCCTTGTAGCTGGAG GATGGTTACTTGCTCCCCAGATGGATATGTTTCTGCTTTGGGACTTCCTAGTCAGAGCTTATCTGGGACTTTATCTCCGTCTATCGGCAATCTCACTAAC CTGCAATCAGTGTTGCTGCAGAATAATGCCATTTCAGGTCCTATACCTGTTGCAATTGGCAAGCTGGAGAAGCTTCAGACACTTGATCTCTCGAACAATA CATTTAGTGGAGATATGCCCACTTCTTTGGGGGACCTCAAGAACCTGAATTACCTGCGATTAAATAACAATAGCCTTACTGGACCCTGCCCCGAGTCTCT GTCCAATCTCAAAGGTCTCACACTTGTGGATCTTTCATTTAACAATCTGAGCGGTTCCTTGCCAAAAATATCAGCAAGAACTTTCAAAGTTACGGGTAAT CCTTTAATATGTGGACCTAAGGCCAGTAACAGCTGTTCTGCTGTCTTTCCAGAGCCTCTTTCTCTCCCACCAGATGGTCTGAATGGTCAATCCAGCTCTG GAACAAATGGTCACCGTGTGGCTATTGCTTTTGGTGCAAGCTTTGGTGCTGCCTTTTCCACCATAATAGTTATTGGGTTACTTGTTTGGTGGCGATATAG ACACAACCAGCAAATTTTCTTTGATGTCAATGAGCAATATGACCCAGAGGTATGCTTGGGCCATGTAAGAAGGTATACATTTAAGGAGCTGCGTACTGCA ACTGATCATTTCAGTTCAAAGAATATTCTCGGGACAGGTGGATTTGGCATTGTGTACAAGGGATGGTTGAATGATGGAACTGTGGTGGCTGTCAAAAGGC TGAAGGACTTTAATGTTGCTGGTGGTGAAATCCAATTCCAGACAGAAGTAGAAACCATAAGTTTGGCTGTCCATCGAAATCTTCTAAGGCTCTCCGGGTT CTGCACAACTGAGAATGAAAGGCTTCTTGTTTACCCCTATATGCCGAATGGAAGTGTAGCATCTCAATTAAGAGATCATATTCATGATCGACCAGCTTTG GACTGGGCAAGAAGAAAGAGGATAGCTCTAGGTACAGCTAGGGGGCTCCTATATTTGCATGAGCAATGTGACCCCAAAATTATTCATCGTGATGTCAAAG CGGCCAACATTTTATTGGATGAGGACTTTGAGGCAGTTGTTGGAGATTTTGGGTTGGCAAAGCTTTTGGATCACAGAGATTCCCATGTGACCACAGCTGT TCGTGGCACCGTCGGTCATATTTCTCCGGAGTATTTATCAACAGGTCAGTCATCGGAAAAGACTGATGTGTTTGGGTTTGGGATCTTGCTTCTTGAGCTA ATCACAGGTCAGAAGGCATTAGATTTTGGAAGGGCAGCAAACCAGAAAGGCGTCATGCTTGATTGGGTGAAGAAGCTCCATCAGGACAGAAAGCTAAATC TCATGGTGGATAAGGATCTTAGAGGCAAGTTTGACAGAATTGAATTAGAAGAAATGGTTCAGGTTGCTCTTTTATGTACTCAATTTAATCCTTCTCACCG GCCAAAGATGTCTGAAGTACTAAAGATGTTAGAAGGTGATGGTTTAGCTGAGAAATGGGAAGCCTCACAAAAAGTGGAGACCCCAAGGTTCCGATCATGT GAAAACCCTCCTCAAAAATATTCTGATTTTATAGAAGAATCCTCCCTTGTGGTAGAAGCAATGGAGCTTTCTGGTCCTCGGTGA
AA sequence Show only first row Show all	>Potri.008G188800.2 pacid=42806510 polypeptide=Potri.008G188800.2.p locus=Potri.008G188800 ID=Potri.008G188800.2.v4.1 annot-version=v4.1 MESRRSFGFCTVVFLVLALMEISSATLSPTGINFEVVALVAIKTALLDPYNVLENWDINSVDPCSWRMVTCSPDGYVSALGLPSQSLSGTLSPSIGNLTN LQSVLLQNNAISGPIPVAIGKLEKLQTLDLSNNTFSGDMPTSLGDLKNLNYLRLNNNSLTGPCPESLSNLKGLTLVDLSFNNLSGSLPKISARTFKVTGN PLICGPKASNSCSAVFPEPLSLPPDGLNGQSSSGTNGHRVAIAFGASFGAAFSTIIVIGLLVWWRYRHNQQIFFDVNEQYDPEVCLGHVRRYTFKELRTA TDHFSSKNILGTGGFGIVYKGWLNDGTVVAVKRLKDFNVAGGEIQFQTEVETISLAVHRNLLRLSGFCTTENERLLVYPYMPNGSVASQLRDHIHDRPAL DWARRKRIALGTARGLLYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHISPEYLSTGQSSEKTDVFGFGILLLEL ITGQKALDFGRAANQKGVMLDWVKKLHQDRKLNLMVDKDLRGKFDRIELEEMVQVALLCTQFNPSHRPKMSEVLKMLEGDGLAEKWEASQKVETPRFRSC ENPPQKYSDFIEESSLVVEAMELSGPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G60800		NIK3	NSP-interacting kinase 3 (.1)		Potri.008G188800 [exp]	0	1
AT1G30280			Chaperone DnaJ-domain superfam...		Potri.011G081500 [exp]	1.00	0.9034
AT1G17820			Putative integral membrane pro...		Potri.018G152400 [exp]	5.29	0.8787
AT1G63855			Putative methyltransferase fam...		Potri.005G109000 [exp]	6.32	0.8621
AT1G54610			Protein kinase superfamily pro...		Potri.002G065100 [exp]	7.74	0.8534
AT5G40840		SYN2, ATRAD21.1	Sister chromatid cohesion 1 \(...		Potri.017G067400 [exp]	8.30	0.8763	SYN2.1
AT5G26980		ATSYP41, ATTLG2...	syntaxin of plants 41 (.1.2)		Potri.002G200400 [exp]	8.94	0.8578	SYP42.1
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Potri.008G066400 [exp]	10.09	0.8260	LAX1.1,PtrAUX4
AT1G67280			Glyoxalase/Bleomycin resistanc...		Potri.006G239802 [exp]	13.19	0.8420
AT2G20770		GCL2	GCR2-like 2 (.1)		Potri.013G134700 [exp]	15.42	0.8602
AT1G52190			Major facilitator superfamily ...		Potri.001G185700 [exp]	15.90	0.8482

Compare expression of checked genes

Potri.008G188800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.