Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ACLA.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60810 725 / 0 ACLA-2 ATP-citrate lyase A-2 (.1) AT1G10670 724 / 0 ACLA-1 ATP-citrate lyase A-1 (.1.2.3.4) AT1G09430 696 / 0 ACLA-3 ATP-citrate lyase A-3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G042700 [exp] 760 / 0 AT1G10670 716 / 0.0 ATP-citrate lyase A-1 (.1.2.3.4) Potri.005G004900 [exp] 709 / 0 AT1G09430 795 / 0.0 ATP-citrate lyase A-3 (.1) Potri.013G004400 [exp] 706 / 0 AT1G09430 790 / 0.0 ATP-citrate lyase A-3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013032 [exp] 745 / 0 AT1G60810 766 / 0.0 ATP-citrate lyase A-2 (.1) Lus10030897 [exp] 733 / 0 AT1G60810 761 / 0.0 ATP-citrate lyase A-2 (.1) Lus10030592 [exp] 682 / 0 AT1G60810 709 / 0.0 ATP-citrate lyase A-2 (.1) Lus10029129 [exp] 608 / 0 AT1G60810 627 / 0.0 ATP-citrate lyase A-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0179 [poplar] [flax] ATP-grasp PF08442 [poplar] [flax] ATP-grasp_2 ATP-grasp domain CL0506 [poplar] [flax] Succ_CoA_synth PF16114 [poplar] [flax] Citrate_bind ATP citrate lyase citrate-binding
Representative CDS sequence Show only first row Show all	>Potri.008G188900.1 pacid=42805804 polypeptide=Potri.008G188900.1.p locus=Potri.008G188900 ID=Potri.008G188900.1.v4.1 annot-version=v4.1 ATGGCGCGCAAGAAGATCAGAGAGTACGACTCCAAGAGATTGTTGAAGGAGCATTTCAAGAGGCTTTCTGGACGCGATTTGCCCATCAAATCTGCTCAAG TGACGGAATCGACTGATTTCAATGAGTTAGCAGAGAAAGAACCGTGGCTGTCATCAGCAAAACTGGTTGTAAAACCTGACATGCTGTTTGGGAAACGTGG GAAGAGTGGCCTTGTTGCTTTAAATCTGGATCTGGATCAAGTTGCTGATTTTGTCCAACAACGTCTTGGCAAAGAGGTCGAAATGGGCGGATGCAAAGGA CCTATAACGACATTCATCATTGAACCCTTTATCCCCCACGACCAAGAGTTCTATCTAAACATTGTCTCGGAGAGACTTGGGTGCAGCATCAGCTTTTCCG AATGCGGAGGGATTGAAATTGAAGAGAATTGGGATAAGGTTAAAACTATATTTGTTCCAACAGGGGCAACGTTTACTTCTGAAGTTTGTGCTCCACTTGT TGCGACCATTCCTTTGGAGATAAAAGGAGAGATTGAGGAGTTCATTCAATCGGCTTTTGCTCTTTTTCAAGATCTTGACTTCACTTTCCTAGAGATGAAT CCTTTCACCTTGGTTGATGGAAAGCCCTATCCTTTGGATATGAGAGGCGAGCTGGACGACACTGCGGCATTTAAAAACTTCAAAAAGTGGGGGAACATTG AATTTCCAATGCCATTTGGAAGAGTTATGAGCTCTACAGAAAGCTTTGTTCATGGCCTAGATGAAAAAACAAGTGCATCTTTGAAATTCACGGTATTGAA TCCAGAGGGGCGAATTTGGACTATGGTGGCTGGAGGAGGTGCAAGTGTCATCTATGCTGATACGGTCGGAGATCTTGGCTATGCTTCCGAACTTGGGAAC TATGCAGAATATAGTGGAGCCCCCAATGAAGATGAGGTGTTGCAGTATGCCAGAGTTGTAATTGATTGTGCAACTTCTGATCCTGATGGCCACAAGAGAG CCCTTGTAATTGGAGGAGGAATTGCTAATTTTACTGATGTTGCTGCTACATTTAATGGCATAATTCGAGCCCTGAAGGAGAAGGAATCGAAGCTGAAAGC AGCAAGGATGAATATATATGTGAGGAGAGGAGGTCCTAATTACCAGAGGGGCCTTGCGAAAATGAGGGCACTTGGAGAGGAAATTGGAATCCCAATTGAG GTCTATGGCCCGGAAGCAACAATGACTGGCATATGCAAACAGGCAATCGAGTGCATCACTGCAGCTGCATAA
AA sequence Show only first row Show all	>Potri.008G188900.1 pacid=42805804 polypeptide=Potri.008G188900.1.p locus=Potri.008G188900 ID=Potri.008G188900.1.v4.1 annot-version=v4.1 MARKKIREYDSKRLLKEHFKRLSGRDLPIKSAQVTESTDFNELAEKEPWLSSAKLVVKPDMLFGKRGKSGLVALNLDLDQVADFVQQRLGKEVEMGGCKG PITTFIIEPFIPHDQEFYLNIVSERLGCSISFSECGGIEIEENWDKVKTIFVPTGATFTSEVCAPLVATIPLEIKGEIEEFIQSAFALFQDLDFTFLEMN PFTLVDGKPYPLDMRGELDDTAAFKNFKKWGNIEFPMPFGRVMSSTESFVHGLDEKTSASLKFTVLNPEGRIWTMVAGGGASVIYADTVGDLGYASELGN YAEYSGAPNEDEVLQYARVVIDCATSDPDGHKRALVIGGGIANFTDVAATFNGIIRALKEKESKLKAARMNIYVRRGGPNYQRGLAKMRALGEEIGIPIE VYGPEATMTGICKQAIECITAAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G60810		ACLA-2	ATP-citrate lyase A-2 (.1)		Potri.008G188900 [exp]	0	1	Pt-ACLA.1
AT4G39955			alpha/beta-Hydrolases superfam...		Potri.005G074066 [exp]	10.09	0.7398
AT3G54250			GHMP kinase family protein (.1...		Potri.010G237900 [exp]	20.39	0.6848	MVD1.2
AT4G30810		SCPL29	serine carboxypeptidase-like 2...		Potri.018G103100 [exp]	20.97	0.6741
AT4G11820		FKP1, EMB2778, ...	FLAKY POLLEN 1, hydroxymethylg...		Potri.003G120300 [exp]	21.90	0.6850
AT5G49810		MMT	methionine S-methyltransferase...		Potri.004G229800 [exp]	24.31	0.6057	Pt-MMT.1,MMT
AT1G23149		CPuORF29	conserved peptide upstream ope...		Potri.008G131550 [exp]	26.87	0.6584
AT3G15260			Protein phosphatase 2C family ...		Potri.001G398100 [exp]	50.73	0.6056
AT2G02960			RING/FYVE/PHD zinc finger supe...		Potri.008G086300 [exp]	63.76	0.6235
AT2G23770			protein kinase family protein ...		Potri.014G040000 [exp]	78.66	0.6642
AT2G44350		CSY4, ATCS	CITRATE SYNTHASE 4, Citrate sy...		Potri.001G230500 [exp]	79.93	0.6670	ATCS.2

Compare expression of checked genes

Potri.008G188900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.