Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60470 545 / 0 ATGOLS4 galactinol synthase 4 (.1) AT2G47180 502 / 3e-180 ATGOLS1 galactinol synthase 1 (.1) AT1G56600 478 / 8e-171 ATGOLS2 galactinol synthase 2 (.1) AT1G60450 476 / 5e-170 ATGOLS7 galactinol synthase 7 (.1) AT1G09350 464 / 2e-165 ATGOLS3 galactinol synthase 3 (.1) AT4G26250 444 / 1e-157 ATGOLS6 galactinol synthase 6 (.1) AT5G23790 426 / 3e-150 ATGOLS5 galactinol synthase 5 (.1) AT5G30500 414 / 1e-145 GolS10 galactinol synthase 10, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT3G18660 80 / 2e-16 PGSIP1, GUX1 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) AT1G54940 80 / 3e-16 PGSIP4 plant glycogenin-like starch initiation protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G042000 [exp] 632 / 0 AT1G60470 534 / 0.0 galactinol synthase 4 (.1) Potri.014G116800 [exp] 497 / 2e-178 AT2G47180 568 / 0.0 galactinol synthase 1 (.1) Potri.002G191600 [exp] 488 / 7e-175 AT2G47180 565 / 0.0 galactinol synthase 1 (.1) Potri.010G150400 [exp] 482 / 1e-172 AT2G47180 519 / 0.0 galactinol synthase 1 (.1) Potri.005G006800 [exp] 474 / 2e-169 AT1G56600 539 / 0.0 galactinol synthase 2 (.1) Potri.013G005800 [exp] 471 / 4e-168 AT1G56600 543 / 0.0 galactinol synthase 2 (.1) Potri.008G101000 [exp] 469 / 2e-167 AT2G47180 507 / 0.0 galactinol synthase 1 (.1) Potri.013G005900 [exp] 334 / 1e-115 AT1G56600 363 / 2e-127 galactinol synthase 2 (.1) Potri.005G033500 [exp] 85 / 8e-18 AT1G08990 555 / 0.0 plant glycogenin-like starch initiation protein 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029145 [exp] 499 / 7e-179 AT2G47180 493 / 1e-176 galactinol synthase 1 (.1) Lus10031434 [exp] 473 / 1e-168 AT2G47180 543 / 0.0 galactinol synthase 1 (.1) Lus10010897 [exp] 466 / 6e-166 AT2G47180 533 / 0.0 galactinol synthase 1 (.1) Lus10013020 [exp] 335 / 5e-114 AT2G47180 336 / 3e-114 galactinol synthase 1 (.1) Lus10021731 [exp] 86 / 5e-18 AT4G33330 803 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Lus10042658 [exp] 85 / 7e-18 AT4G33330 801 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Lus10029932 [exp] 85 / 7e-18 AT1G54940 527 / 0.0 plant glycogenin-like starch initiation protein 4 (.1) Lus10018922 [exp] 82 / 6e-17 AT1G77130 847 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Lus10031507 [exp] 82 / 7e-17 AT1G54940 542 / 0.0 plant glycogenin-like starch initiation protein 4 (.1) Lus10028623 [exp] 82 / 9e-17 AT1G77130 830 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01501 [poplar] [flax] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Potri.008G189400.1 pacid=42806085 polypeptide=Potri.008G189400.1.p locus=Potri.008G189400 ID=Potri.008G189400.1.v4.1 annot-version=v4.1 ATGGCCCCAGGAGTGCCTATAGATGGGAATATTTTGGGTACCGGGAAGGTTTCCACAGTTAACACTGGCTATTCTAAGAGGGCCTACGTGACATTTTTAG CCGGCAACGGGGATTATGTTAAAGGGGTAGTTGGGTTGGCTAAGGGTTTGCGCAAGGTGAAGAGTGCATACCCTCTTGTCGTAGCAATCTTGCCGGATGT GCCCGAGGAACACCGTGACATTTTGAGGTCTCAAGGTTGCATTGTTCGTGAGATCGAGCCTATTTATCCACCTGAGAACCAGATTCAGTTTGCCATGGCC TACTACGTGATCAACTACTCCAAGCTCCGAATTTGGAATTTTGAGGAGTACAGCAAGATGATATATTTGGATGCTGATATCCAAGTGTTCGAGAATATAG ACCATCTATTTGACACCCAAGATGGCTACTTCTACGCCGTGATGGACTGCTTCTGTGAGAAAACATGGAGCCACTCCCCTCAATACTCCGTCGGCTACTG CCAGCAGTGCCCGGAAAAGATAACATGGCCTGCTGAGATGGGCTCTCCTCCTCCCCTGTACTTCAATGCTGGGATGTTTGTATTTGAGCCTAGTCGTTTG ACTTATGAGAGCCTTCTTGAGAGGCTGCAGATCACCCCACCAACCCCCTTTGCCGAGCAAGATTTCTTGAATATGTTTTTCCAAAAAACATACAAGCCAA TCCCTCTGCTTTACAACCTGGTTTTAGCCATGTTATGGCGACATCCTGAGAACGTGGAGGTCGAGAAGGTTAAAGTGGTTCACTACTGTGCTGCTGGTTC AAAACCTTGGAGATATACTGGCGAGGAAGCTAACATGGATAGAGAGGACATCAAGATGTTAGTGGCAAAATGGTGGGATATATATAATGATGAGTCCCTC GATTTCAATGGCGAAAACTCAGTTCCAGAAGAAGAAACAATATTCTCGAGGTCATCCATCTTGTCTTCCATGCCTGAGCCTGCCATATCCTACGTCCCTG CACCAACTGCTGCTTAA
AA sequence Show only first row Show all	>Potri.008G189400.1 pacid=42806085 polypeptide=Potri.008G189400.1.p locus=Potri.008G189400 ID=Potri.008G189400.1.v4.1 annot-version=v4.1 MAPGVPIDGNILGTGKVSTVNTGYSKRAYVTFLAGNGDYVKGVVGLAKGLRKVKSAYPLVVAILPDVPEEHRDILRSQGCIVREIEPIYPPENQIQFAMA YYVINYSKLRIWNFEEYSKMIYLDADIQVFENIDHLFDTQDGYFYAVMDCFCEKTWSHSPQYSVGYCQQCPEKITWPAEMGSPPPLYFNAGMFVFEPSRL TYESLLERLQITPPTPFAEQDFLNMFFQKTYKPIPLLYNLVLAMLWRHPENVEVEKVKVVHYCAAGSKPWRYTGEEANMDREDIKMLVAKWWDIYNDESL DFNGENSVPEEETIFSRSSILSSMPEPAISYVPAPTAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G60470		ATGOLS4	galactinol synthase 4 (.1)		Potri.008G189400 [exp]	0	1
AT3G25810			Terpenoid cyclases/Protein pre...		Potri.017G041700 [exp]	1.41	0.9739
AT4G23140		RLK5, CRK6	cysteine-rich RLK (RECEPTOR-li...		Potri.004G028400 [exp]	2.44	0.9650
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.017G030600 [exp]	2.82	0.9699
AT5G51545		LPA2	low psii accumulation2 (.1)		Potri.015G129600 [exp]	8.24	0.9582
AT4G23140		RLK5, CRK6	cysteine-rich RLK (RECEPTOR-li...		Potri.004G028532 [exp]	8.48	0.9390
AT1G08845			Ribosomal L18p/L5e family prot...		Potri.013G029300 [exp]	8.60	0.9110
					Potri.005G063600 [exp]	12.04	0.9566
AT2G46735			unknown protein		Potri.002G178100 [exp]	17.32	0.9480
AT5G53590			SAUR-like auxin-responsive pro...		Potri.001G306300 [exp]	19.33	0.9242
AT1G53035			unknown protein		Potri.004G044000 [exp]	19.87	0.8910

Compare expression of checked genes

Potri.008G189400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.