Plant FIBer expression Database

Potri.008G189500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G32180 505 / 4e-174 ATPANK2 pantothenate kinase 2 (.1.2.3)
AT1G60440 478 / 6e-169 ATCOAA, ATPANK1 pantothenate kinase 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G041800
[exp]
692 / 0 AT4G32180 516 / 2e-178 pantothenate kinase 2 (.1.2.3)
Potri.015G077300
[exp]
530 / 0 AT4G32180 1469 / 0.0 pantothenate kinase 2 (.1.2.3)
Potri.012G081600
[exp]
522 / 6e-179 AT4G32180 1486 / 0.0 pantothenate kinase 2 (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029146
[exp]
547 / 0 AT4G32180 500 / 7e-172 pantothenate kinase 2 (.1.2.3)
Lus10013019
[exp]
544 / 0 AT4G32180 503 / 3e-173 pantothenate kinase 2 (.1.2.3)
Lus10009520
[exp]
520 / 8e-178 AT4G32180 1510 / 0.0 pantothenate kinase 2 (.1.2.3)
Lus10020341
[exp]
511 / 1e-174 AT4G32180 1348 / 0.0 pantothenate kinase 2 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0108 Actin_ATPase PF03630 Fumble Fumble
Representative CDS sequence
>Potri.008G189500.1 pacid=42807719 polypeptide=Potri.008G189500.1.p locus=Potri.008G189500 ID=Potri.008G189500.1.v4.1 annot-version=v4.1
ATGGAACATAATAGAGAGGTTGAAATTGATGGGAATTCAAATCCAATTCAAATATCTCGCTTGGCCCTCGATATTGGAGGATCTCTAATCAAGTTGGTGT
TTTTCTCGAGAAATTCTGGGGATGATGAGGACCCACCAAAGGATTTAGTTGGAGTTTCCAGTGGTGTTAATGGAAGGCTTCACTTTGCCAAGTTTGAGAC
AGCCAAGATCAATGATTGCTTACAGTTTATTAGTGCCAACAAACTTCTCCTTGGTGGTGGTTTCCAGCATCAAGAAAATTGTACCAATGACAGGAGCTTT
ATTAAGGCCACAGGTGGTGGGGCATACAAGTTCTCTGAACTTTTCAAAGAAAAGCTTGGCATTAGTCTTGAGAAGGAAGATGAGATGGATTGTCTTGTGA
CGGGAGCAAATTTTTTGCTTAAGGCAGTCAATCAGGAAGCTTTTACATACTTGAATGGCTCGAAGGAATTTGTGCAGATTGACCATAATGATTTGTATCC
ATATCTACTTGTTAATATTGGATCTGGAGTTAGCATGATCAAGGTGGATGGAGATGGAAAATTTGAGCGAGTTAGTGGAACAAGTGTTGGTGGTGGCACT
TTTTGGGGTTTGGGAAAGTTATTAACAAAATCCCAGAGTTTTGATGAGTTGCTAGAATTGAGTCATCGGGGAGATAACAGAGCTATAGACACACTTGTTG
GGGATATCTATGGTGGGATGGATTATTTAAAGATTGGTCTCTCATCTACAACTATTGCTTCTAGCTTTGGGAAGGCAACTTCTCACAATAAAGAACTCGA
AGATTATAAACCTGAGGATATTTCCCGGTCTCTTCTAAGAATGATTTCCAATAATATTGGACAGATCTCTTACTTAAACGCACTTCGATTTGGGCTCAAG
CGCATAATTTTTGGAGGATTTTTCATCCGGAGTCACTCTTATACTATGGACACCATCGCCGTTGCAGTTCACTTCTGGTCTAAAGGTGAGGCAAAAGCAA
TGTTTTTGCGGCACGAAGGATTTCTTGGAGCTCTAGGGGCATTCATGAGCTATGAAACGCACAGCCTTGATGATTTGGTGGTTAATCAAGTGATGCCGCT
CCCGGTGAATGCATCCCTGGGCACAGATACAAATTATGATCCACTGAAGGGGGATTTAAATGGGACCGAGAGCATACAATGCAGTGTCTATCGAGCTTAG
AA sequence
>Potri.008G189500.1 pacid=42807719 polypeptide=Potri.008G189500.1.p locus=Potri.008G189500 ID=Potri.008G189500.1.v4.1 annot-version=v4.1
MEHNREVEIDGNSNPIQISRLALDIGGSLIKLVFFSRNSGDDEDPPKDLVGVSSGVNGRLHFAKFETAKINDCLQFISANKLLLGGGFQHQENCTNDRSF
IKATGGGAYKFSELFKEKLGISLEKEDEMDCLVTGANFLLKAVNQEAFTYLNGSKEFVQIDHNDLYPYLLVNIGSGVSMIKVDGDGKFERVSGTSVGGGT
FWGLGKLLTKSQSFDELLELSHRGDNRAIDTLVGDIYGGMDYLKIGLSSTTIASSFGKATSHNKELEDYKPEDISRSLLRMISNNIGQISYLNALRFGLK
RIIFGGFFIRSHSYTMDTIAVAVHFWSKGEAKAMFLRHEGFLGALGAFMSYETHSLDDLVVNQVMPLPVNASLGTDTNYDPLKGDLNGTESIQCSVYRA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G32180 ATPANK2 pantothenate kinase 2 (.1.2.3) Potri.008G189500
[exp]
0 1
AT5G48220 Aldolase-type TIM barrel famil... Potri.014G169100
[exp]
1.41 0.8426
AT1G80360 Pyridoxal phosphate (PLP)-depe... Potri.001G177000
[exp]
22.00 0.8143
AT4G18160 KCO6, ATTPK3, A... Ca2+ activated outward rectify... Potri.005G203000
[exp]
23.45 0.8332
AT3G26590 MATE efflux family protein (.1... Potri.019G063500
[exp]
24.31 0.8230
AT5G07990 CYP75B1, D501, ... TRANSPARENT TESTA 7, CYTOCHROM... Potri.013G073300
[exp]
29.24 0.7970 F3H1
AT5G63520 unknown protein Potri.012G100500
[exp]
29.84 0.7863
AT4G17830 Peptidase M20/M25/M40 family p... Potri.001G143200
[exp]
31.40 0.7854
AT3G60340 alpha/beta-Hydrolases superfam... Potri.002G137200
[exp]
35.14 0.7979
AT1G23110 unknown protein Potri.010G111300
[exp]
41.27 0.7427
AT4G38630 ATMCB1, MBP1, A... MULTIUBIQUITIN-CHAIN-BINDING P... Potri.007G056200
[exp]
43.47 0.7822

Potri.008G189500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.