Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23540 643 / 0 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT1G70460 631 / 0 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G10620 570 / 0 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT1G70450 508 / 9e-176 Protein kinase superfamily protein (.1) AT1G68690 486 / 1e-162 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT5G38560 483 / 1e-161 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT1G26150 468 / 6e-155 ATPERK10 proline-rich extensin-like receptor kinase 10 (.1) AT3G24550 457 / 4e-152 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G52290 449 / 5e-151 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT2G18470 442 / 1e-146 AtPERK4, PERK4 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G110400 [exp] 493 / 3e-165 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.004G105200 [exp] 489 / 1e-163 AT5G38560 650 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.008G111600 [exp] 488 / 1e-162 AT1G68690 622 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Potri.010G132900 [exp] 474 / 4e-157 AT1G26150 605 / 0.0 proline-rich extensin-like receptor kinase 10 (.1) Potri.018G081300 [exp] 467 / 1e-155 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.005G124400 [exp] 459 / 1e-153 AT2G18470 597 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.007G027000 [exp] 451 / 8e-150 AT2G18470 599 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.003G053301 [exp] 431 / 9e-143 AT1G52290 531 / 0.0 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) Potri.001G183000 [exp] 430 / 2e-142 AT3G24550 560 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013013 [exp] 598 / 0 AT1G70460 596 / 0.0 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) Lus10029151 [exp] 590 / 0 AT1G23540 575 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Lus10013014 [exp] 587 / 0 AT1G23540 572 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Lus10030879 [exp] 541 / 0 AT1G70460 542 / 0.0 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) Lus10034082 [exp] 498 / 8e-167 AT5G38560 700 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Lus10003066 [exp] 497 / 2e-166 AT5G38560 707 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Lus10011098 [exp] 466 / 3e-155 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10023645 [exp] 464 / 7e-154 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10043219 [exp] 454 / 4e-151 AT3G24550 688 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10017898 [exp] 455 / 3e-150 AT1G68690 631 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.008G189700.1 pacid=42807194 polypeptide=Potri.008G189700.1.p locus=Potri.008G189700 ID=Potri.008G189700.1.v4.1 annot-version=v4.1 ATGTCGAATTCGGTGGGGAATCCGCCGCCGGGTTCTTCATCGAACGAGTCTTTTCCTTTGCAAGTTGACACAAATTCCACCCTCAGTTTAGGCCCTTCAC CTTCAGCTACTGATGGTGAAGAATCAGCGGCACTCGTTGATGACACAGCTACACCACCGCCTAATTCTACTAATGTTGATTCCCCACAAACACCAGAACC ATCTTCACCCCCACCCACTTCGAAATCTCCTCCTCCTCCTCCTCCTCCTTCACCACCACCACCACCACCTCCCAAGTCCAACCATTCTCCACCTCCCAGC CCACCATTAGTCTCAAATTCAACTAAATCAAATTCGTCACCACCACTTAAAATATCTCCGCCACCAAACTCACCACCTCCCTCACCTAATCCTCCTCCTA CCCCTGCCAAGAAAGAGTCATCCTCTTCATCCGTTCCATCCCCTCCTCCTCCTGCTGCATCACCTCCCCCTGCTGGTAAATTTGTCCCGCCGCCTCTCTC TAGAGATGTACAACAATCTCCTCCTCCCCCAGCAGAATTCAAACCCTCTTTGTCTCCCCCCATTTCAAATGTGTCACCCAAGACACTGGATTCAAATAGC AATCCGTCAAATTCCGGGCGCGTTCCAACAGACTCTAGATTTCATAGTCCTCCCGTTCCAGGAGCCTCACCATCGGACCACCCATCATCGACTTCTACTG ATGCAACAAATCACAATGTGCCCAGGACTCCACCAGCACCAGGAAATGAAAGTAACGAAGCTGGAGGCAAGACAATAATAGCTGCGGCTGTTGGGGCTGC AGTCACAGGCTTGTTTCTTCTAACACTAATTGCGGCAATCTTTTTAGTTGTGAAGAGCAGAAAAAAACGGGTGGCCAATGCTTCTGGCCATTACATGCCG CCCAAAAGTTTTACTTTGAAAACAGATGGATATCATTACGGACAGCAACAACAATCTGTGCGTCTCACTGGACCTGGAAGTCCCTCTTATCATTTGCAAT CTGCACCCTCCGAAAGCCACGGAAGTCAAAGAGGGAATATGTACAATGGAGGGGGGCCTGATTCAGATGTCATTGGCACCGGTAAGACCTTTTTCAGCTA CCATGAGCTGATGGAAATAACAAGTGGATTTGCTCGTCAAAATATTATCGGTGAGGGTGGGTTTGGATGTGTTTACAAGGGGTGCATGGCAGATGGGAAG GTAGTGGCTGTCAAACAACTAAAGGCCGGTAGTGGACAGGGTGATCGGGAATTTAAGGCTGAAGTTGAAATTATCAGTCGTGTCCATCATCGACATTTGG TGTCTTTGGTGGGATATTGCATCTCTGACAATCAGCGCTTGCTCATCTACGAATTTGTTCCAAATAAGACTCTTGAGAATCATTTGCATGGAAAAGAATT GCCTGTGTTGGATTGGCCTAAAAGACTCAAAATTGCCATAGGATCTGCAAAGGGCTTGGCATATTTACATGAAGATTGTCATCCGAAAATTATTCACAGA GACATTAAGTCGGCGAACATTTTGTTGGATGATGCTTTCGAAGCGCAGGTTGCAGACTTTGGGCTTGCCAGACTAAATGACACTACTCAGACCCATGTGT CAACTCGAGTAATGGGGACATTTGGGTACTTGGCACCTGAGTATGCGTCAAGTGGAAAGCTAACAGATAGGTCTGATGTATTTTCATTTGGAGTAGTGCT TCTAGAACTGATAACCGGGCGCAAACCAGTTGATGCAAGTCAGCCTCTGGGGGATGAAAGCTTGGTTGAATGGGCTCGTCCACTCCTAATTCATGCCCTT GAAACCGGTGAACTTGGTGAGCTGGTTGATACACGACTTGAAAAGCATTACGTGGAGAGTGAATTGTTCAGAATGGTTGAGACAGCCGCTGCTTGTGTTC GCCATTTGGCTCCAAAGCGACCGCGCATGATGCAGGTGGTGAGAGCATTAGATAGTGGAGGTGAATTGTCGGATCTCAGTAATGGTGTGAAATTTGGTCA GAGCACTGCATATGATTCAGGCCAGTACAATCAAGAGATTAGTAATTTCCGGAGGATGGCTCTTGTCAGTAATGGAAGCTCAGAATTTGACACTTTCAGT GGAGATTACTCTGCTAGAGACACATCCCGGGAACAACCAACTTCAGGTGATTACACAAGTAGCGAGTCAGAAACTCGAGCCATGAACCGAACTGGCAGTT ATGCTGGCCGCCGGTTTAGATAA
AA sequence Show only first row Show all	>Potri.008G189700.1 pacid=42807194 polypeptide=Potri.008G189700.1.p locus=Potri.008G189700 ID=Potri.008G189700.1.v4.1 annot-version=v4.1 MSNSVGNPPPGSSSNESFPLQVDTNSTLSLGPSPSATDGEESAALVDDTATPPPNSTNVDSPQTPEPSSPPPTSKSPPPPPPPSPPPPPPPKSNHSPPPS PPLVSNSTKSNSSPPLKISPPPNSPPPSPNPPPTPAKKESSSSSVPSPPPPAASPPPAGKFVPPPLSRDVQQSPPPPAEFKPSLSPPISNVSPKTLDSNS NPSNSGRVPTDSRFHSPPVPGASPSDHPSSTSTDATNHNVPRTPPAPGNESNEAGGKTIIAAAVGAAVTGLFLLTLIAAIFLVVKSRKKRVANASGHYMP PKSFTLKTDGYHYGQQQQSVRLTGPGSPSYHLQSAPSESHGSQRGNMYNGGGPDSDVIGTGKTFFSYHELMEITSGFARQNIIGEGGFGCVYKGCMADGK VVAVKQLKAGSGQGDREFKAEVEIISRVHHRHLVSLVGYCISDNQRLLIYEFVPNKTLENHLHGKELPVLDWPKRLKIAIGSAKGLAYLHEDCHPKIIHR DIKSANILLDDAFEAQVADFGLARLNDTTQTHVSTRVMGTFGYLAPEYASSGKLTDRSDVFSFGVVLLELITGRKPVDASQPLGDESLVEWARPLLIHAL ETGELGELVDTRLEKHYVESELFRMVETAAACVRHLAPKRPRMMQVVRALDSGGELSDLSNGVKFGQSTAYDSGQYNQEISNFRRMALVSNGSSEFDTFS GDYSARDTSREQPTSGDYTSSESETRAMNRTGSYAGRRFR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G23540		IGI1, AtPERK12	proline-rich extensin-like rec...		Potri.008G189700 [exp]	0	1
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Potri.014G146300 [exp]	8.83	0.6842	SDG938
AT5G05450			P-loop containing nucleoside t...		Potri.010G184132 [exp]	10.95	0.7139
AT2G24640		UBP19	ubiquitin-specific protease 19...		Potri.006G270600 [exp]	10.95	0.6954
					Potri.014G175100 [exp]	18.57	0.7051
AT1G51745			Tudor/PWWP/MBT superfamily pro...		Potri.001G193900 [exp]	22.84	0.6991
AT1G11060			WAPL (Wings apart-like protein...		Potri.004G039900 [exp]	27.49	0.6708
AT5G11790		NDL2	N-MYC downregulated-like 2 (.1...		Potri.018G054900 [exp]	31.81	0.6408
AT1G52320			unknown protein		Potri.003G054800 [exp]	35.70	0.6228
AT5G55060			unknown protein		Potri.011G089300 [exp]	36.27	0.6574
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Potri.017G078800 [exp]	51.49	0.6393	GN.2

Compare expression of checked genes

Potri.008G189700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.