Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70370 841 / 0 PG2 polygalacturonase 2 (.1.2) AT1G23760 833 / 0 PG3, JP630 POLYGALACTURONASE 3, BURP domain-containing protein (.1) AT1G60390 768 / 0 PG1 polygalacturonase 1 (.1) AT5G25610 117 / 3e-28 ATRD22, RD22 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) AT1G49320 95 / 2e-21 ATUSPL1 unknown seed protein like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G040800 [exp] 1086 / 0 AT1G70370 819 / 0.0 polygalacturonase 2 (.1.2) Potri.012G079200 [exp] 746 / 0 AT1G70370 747 / 0.0 polygalacturonase 2 (.1.2) Potri.006G243700 [exp] 134 / 3e-34 AT5G25610 319 / 4e-107 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.018G036700 [exp] 134 / 6e-34 AT5G25610 307 / 2e-101 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.006G243600 [exp] 133 / 9e-34 AT5G25610 299 / 2e-98 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.004G136000 [exp] 124 / 5e-31 AT5G25610 211 / 3e-65 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.004G136900 [exp] 124 / 5e-31 AT5G25610 211 / 2e-65 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.T012700 [exp] 123 / 1e-30 AT5G25610 214 / 2e-66 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.T012500 [exp] 122 / 4e-30 AT5G25610 208 / 4e-64 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013009 [exp] 895 / 0 AT1G70370 834 / 0.0 polygalacturonase 2 (.1.2) Lus10029156 [exp] 889 / 0 AT1G70370 820 / 0.0 polygalacturonase 2 (.1.2) Lus10034881 [exp] 655 / 0 AT1G70370 682 / 0.0 polygalacturonase 2 (.1.2) Lus10033417 [exp] 655 / 0 AT1G70370 681 / 0.0 polygalacturonase 2 (.1.2) Lus10022114 [exp] 134 / 1e-33 AT5G25610 357 / 5e-121 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Lus10007674 [exp] 132 / 5e-33 AT5G25610 353 / 2e-119 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Lus10026333 [exp] 121 / 4e-31 AT1G49320 187 / 9e-59 unknown seed protein like 1 (.1) Lus10007011 [exp] 122 / 1e-30 AT1G49320 213 / 7e-68 unknown seed protein like 1 (.1) Lus10032324 [exp] 120 / 3e-30 AT1G49320 184 / 4e-57 unknown seed protein like 1 (.1) Lus10003263 [exp] 121 / 5e-30 AT5G25610 266 / 7e-87 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03181 [poplar] [flax] BURP BURP domain
Representative CDS sequence Show only first row Show all	>Potri.008G190000.1 pacid=42807427 polypeptide=Potri.008G190000.1.p locus=Potri.008G190000 ID=Potri.008G190000.1.v4.1 annot-version=v4.1 ATGCATATTCTTCACCCCATTACCCTTCTTCTCTCCCTTTCCTTCGTCTCATTGCTCAATGTGAATCATGCAGCAGTTGGCAGTGGAGATTCGCCAAACG GTGAGAGCCCATTTACGCCCAAGGCATCTCTAGTTCGGTACTGGAACAAGGAGATCCACACGGTTTTACCAAAATCTGGTTTTTTCATCTCCAAAGCCTC CCCGTTGAGTCCTGTCGATTTGGCAACATTTGCTAAACTCGCCTCCCAAAATGCTCTCTCCGCTCAACTCCCAGCCTTTTGTTCCTCTGCCGAACTCTTC TGCTTCCCTGATTTGTCTCCCAGTCTTGAAAAGCATGACCATGACTCCCATTTCGCTATCTATAACAACAAGAATTTCAGCAATTACGGCACTGATCGAG CCGGTGGAGCGGACTCTTTCAAGAACTATTCCGATGGTGACAATATCCCGGTCGACTCGTTCCGCCGGTACGGCCGCGACGCCGCCGGTCACGGCGAGTT GTTTTCCAGTTATGCCCCTGACTCCAACGTTGTTGACCAGAGCTTTAACACCTATGGCGCTGGTGCGACTGGCGGCGCTGGAGAGTTCAAGGGGTACAAT GTGGAGGTAAACAACCCAAATCTTCGCTTTGTTTCCTATTCTGATAGTGCTAATGGGAAGGGCCAGAAGTTCTCGACTTACACAGAGAATGCGAATGCTG GACCGGGTCAAGCTTTCACCAGTTATGGGAAGAACGGGAATGGAGCTCCCAATGAGTTCTCTGGTTATGGGACGAGCTCGAATGTGGTTGGTTCAGATTT CACCAACTATGGTGAGACTGCCAATGGGGCTAATGATACTTTCAAGTCTTACGGAGTTGATGGGAATGTTCCACAGAATAATTTCGTGAACTATGGCGAT GGTGGGAATGCTGGTGTTGATAGCTTCGCCACTTACAGGGAAAAATCAAATGTTGGGGATGATTCCTTTCAAACTTATGCCAAGAATTCGAATGCAGAGA AAGCCAATTTCGCCAATTATGGAAAATCCTTCAATGAAGGGACTGATAAGTTCTCTGGCTATGGGAATGGAGCAATGGGGCAGCAGATTGGGTTCAAGAT CTACGGAGTAAACACCACTTTCAAAGACTATGCCAATAAGAAGGGTGTCACTTTTGCTGGGTACACTAGCGCAAGCACTGCCGATGCTTCAATGAAGGTA AACAGTGACAGTGTGGTAAAAAACAATAAGTGGATAGAGCCCGGAAAATTCTTCCGGGAGTCGATGTTGAAAAAGGGAAGTGTGATGCCAATGCCGGACA TTCGAGACAAAATGCCCAAAAGATCCTTTCTGCCTCGCTCCATCATCTCCAAACTACCCTTTTCCACCTCCAAAATTGATCAGCTAAAGGAGATTTTTCA TGCTAGTGATAATTCAAGCATGGAGAGGATCATTTTGGATGCTCTTGAAGAGTGTGAGAGATCACCCAGCCCTGGCGAGACCAAGCGCTGTGCGGGCTCG GCCGAGGACATGATCGATTTTGCAACCTCTGTGTTAGGCCGCAACGTGGCTGTCCGTACGACGGATAACGTGAATGGGTCGAAGAAAAACATCATGATTG GATCGATCAAAGGGATCAACGGTGGGAGAGTGACCAGGTCAGTCTCTTGTCACCAGACCCTCTATCCTTACCTGCTCTATTACTGCCACTCTGTTCCCAA AGTTCGGGTCTACGAAGCCGATCTTTTGGATCCAAATAGCAAGGCCACGATAAATCATGGTGTTGCCATCTGCCACTTGGATACATCTTCCTGGAGCCCC ACCCATGGAGCCTTTTTGGCCCTGGGTTCGGGTCCGGGCCGGATTGAGGTCTGTCACTGGATTTTTGAGAATGATATGACATGGACCATTGCCGAAGCCT AA
AA sequence Show only first row Show all	>Potri.008G190000.1 pacid=42807427 polypeptide=Potri.008G190000.1.p locus=Potri.008G190000 ID=Potri.008G190000.1.v4.1 annot-version=v4.1 MHILHPITLLLSLSFVSLLNVNHAAVGSGDSPNGESPFTPKASLVRYWNKEIHTVLPKSGFFISKASPLSPVDLATFAKLASQNALSAQLPAFCSSAELF CFPDLSPSLEKHDHDSHFAIYNNKNFSNYGTDRAGGADSFKNYSDGDNIPVDSFRRYGRDAAGHGELFSSYAPDSNVVDQSFNTYGAGATGGAGEFKGYN VEVNNPNLRFVSYSDSANGKGQKFSTYTENANAGPGQAFTSYGKNGNGAPNEFSGYGTSSNVVGSDFTNYGETANGANDTFKSYGVDGNVPQNNFVNYGD GGNAGVDSFATYREKSNVGDDSFQTYAKNSNAEKANFANYGKSFNEGTDKFSGYGNGAMGQQIGFKIYGVNTTFKDYANKKGVTFAGYTSASTADASMKV NSDSVVKNNKWIEPGKFFRESMLKKGSVMPMPDIRDKMPKRSFLPRSIISKLPFSTSKIDQLKEIFHASDNSSMERIILDALEECERSPSPGETKRCAGS AEDMIDFATSVLGRNVAVRTTDNVNGSKKNIMIGSIKGINGGRVTRSVSCHQTLYPYLLYYCHSVPKVRVYEADLLDPNSKATINHGVAICHLDTSSWSP THGAFLALGSGPGRIEVCHWIFENDMTWTIAEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Potri.008G190000 [exp]	0	1
AT1G13250		GATL3	galacturonosyltransferase-like...		Potri.010G129400 [exp]	1.73	0.8921
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Potri.009G093900 [exp]	2.00	0.8906
AT4G30410			sequence-specific DNA binding ...		Potri.006G177000 [exp]	4.24	0.8594
AT5G51750		ATSBT1.3	subtilase 1.3 (.1)		Potri.015G133800 [exp]	4.58	0.8587
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Potri.005G245800 [exp]	4.89	0.8731	SMT1.2
AT4G30410			sequence-specific DNA binding ...		Potri.018G099100 [exp]	6.24	0.8517
AT2G26110			Protein of unknown function (D...		Potri.018G053000 [exp]	6.32	0.8570
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Potri.003G161700 [exp]	9.48	0.8781	CYP51G5,CYP51.1
AT3G53380			Concanavalin A-like lectin pro...		Potri.016G087800 [exp]	10.09	0.8459
AT2G26730			Leucine-rich repeat protein ki...		Potri.018G074300 [exp]	10.48	0.8521

Compare expression of checked genes

Potri.008G190000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.