Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59650 578 / 0 CW14 Protein of unknown function (DUF1336) (.1) AT1G10410 541 / 0 Protein of unknown function (DUF1336) (.1) AT3G29180 349 / 2e-114 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2) AT1G13970 330 / 4e-107 Protein of unknown function (DUF1336) (.1) AT5G39430 329 / 1e-106 Protein of unknown function (DUF1336) (.1) AT3G54800 62 / 5e-10 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) AT4G19040 59 / 9e-09 EDR2 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) AT5G45560 52 / 9e-07 Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein (.1) AT5G24990 49 / 3e-06 Protein of unknown function (DUF1336) (.1) AT5G25010 46 / 4e-05 Protein of unknown function (DUF1336) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G040100 [exp] 870 / 0 AT1G59650 598 / 0.0 Protein of unknown function (DUF1336) (.1) Potri.017G074800 [exp] 496 / 2e-172 AT1G59650 472 / 6e-164 Protein of unknown function (DUF1336) (.1) Potri.017G088000 [exp] 365 / 3e-120 AT3G29180 615 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2) Potri.010G163100 [exp] 340 / 9e-111 AT1G13970 543 / 0.0 Protein of unknown function (DUF1336) (.1) Potri.008G038800 [exp] 63 / 3e-10 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.009G011200 [exp] 60 / 3e-09 AT2G28320 1071 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Potri.010G223400 [exp] 58 / 2e-08 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.018G113100 [exp] 52 / 1e-06 AT5G35180 1028 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010740 [exp] 592 / 0 AT1G59650 610 / 0.0 Protein of unknown function (DUF1336) (.1) Lus10036683 [exp] 557 / 0 AT1G59650 603 / 0.0 Protein of unknown function (DUF1336) (.1) Lus10039463 [exp] 462 / 4e-158 AT1G59650 478 / 3e-165 Protein of unknown function (DUF1336) (.1) Lus10005831 [exp] 459 / 6e-157 AT1G59650 471 / 1e-162 Protein of unknown function (DUF1336) (.1) Lus10026633 [exp] 335 / 3e-109 AT1G13970 504 / 4e-176 Protein of unknown function (DUF1336) (.1) Lus10030425 [exp] 333 / 1e-108 AT1G13970 499 / 2e-174 Protein of unknown function (DUF1336) (.1) Lus10037132 [exp] 322 / 2e-104 AT3G29180 470 / 9e-163 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2) Lus10000174 [exp] 174 / 5e-52 AT1G13970 224 / 2e-72 Protein of unknown function (DUF1336) (.1) Lus10036799 [exp] 149 / 2e-40 AT1G13970 181 / 7e-53 Protein of unknown function (DUF1336) (.1) Lus10019068 [exp] 66 / 5e-11 AT5G35180 589 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07059 [poplar] [flax] DUF1336 Protein of unknown function (DUF1336)
Representative CDS sequence Show only first row Show all	>Potri.008G190500.1 pacid=42807708 polypeptide=Potri.008G190500.1.p locus=Potri.008G190500 ID=Potri.008G190500.1.v4.1 annot-version=v4.1 ATGGGGGCCTGTGTGTCAACTCCAGAGGGGTGTGCTCGTTGCAGATTGAGTTCTTCAGAAAAGATAAAGTTACGCAGGAAAGGCAAGGAAAATACTACTG TCAAGAGAAGATCAGTGCCGCCATGTAGAGATGACAGGTCTGATGGCCATGCTCCTGCTGCTCCTCCGCTTCGTCTACCTTCCTCCACCAACCCCACTTT TGAAGCAGGAAATATCGAGGAGCCATGGTTTGACTCAGCTTCAAAATTTGAGTCTGATTGCGATGAAGATTTTGAAAGTTTTCCAGATGATGTCTTATCT CTAAATGGCTTTGAAGGTGCATCACTGTCAAGTATTGCATCTGGCAGAGTTGCCAATCATGGAGACTATAATAATGTCAATATGCAAGATTCCTCCTTCA CTGATCAGATGCAGCAGGCGGGGGATTTATCTGGAAATTCCACACATGGCCCTGTTAGTAACTTCACTAAACAATCAAATATTCAGGTCCTCAATTCAGA TTATGTCGATTCCCTATCCAAATCTGATGGACTTTCAAATGAAGTAAAGCAACCAGTGTTCCTTGATGAAATCACCTCTGTGGATGAAAATGCTGGTAAG GAGGAAGGATTATTAGACATCTGTGGAACTATTCCAGGCAACTGCTTGCCTTGCCTCGCCTCAGCTGTTCCATCGGTTGAAAAGAGAAGATCGCTAAGCT CTAGTTCACCAAGTGCAAGGAAAAAGGGTGCCTTAAAACCCCCATTCAAGTGGAAGGAAGGGAATTCTAGCAACACTTTATTTTCTTCAAAGACGATTCT GCACAGACCACAAGCAGGGTCCCAAGTACCCTTTTGTCCGGTGGAGAAAAAAATGCTCGATTGTTGGTCGCAAATCGAGCCATGTAGTTTTAAAATTCGA GGAAAGAATTATTTCAGGGACAAGAAGAAGGAATTTGCTCCTAACTGTGCTGCATACTATCCATTTGGTGTTGATGTGTTCTTGTCTCCACGAAAAATTG ATCATATAGCTCGGTTTGTGAACCTCCCTGCTATTAACTCTGCCGGGAAGGTCCCACCTATCCTTGTTGTAAATGTTCAGATTCCACTGTATCCTGCCGC AATTTTTCAGAGTGAAACAGATGGAGAAGGAGCAAATTTTGTTTTGTATTTTAAGCTTTCTGATAGTTACTCTAAGGAACTTCCAACCCACTTTCAAGAA AGCATCAGACGATTGATTGATGATGAAGTTGAAAGGGTCAAAGGTTTTCGTGTAGATACAACTATACCTTTCCGAGAAAGGTTAAAGATATTGGGCCGTG TTGCAAACGTAGAAGATCTTCATTTAAGTGCTGCAGAAAGGAAGCTCATGCAGGCTTACAATGAGAAACCTGTTCTTTCACGTCCGCAACATGAGTTCTA CTTGGGACATAATTACTTCGAGATTGATATCGACATGCACAGGTTCAGTTACATCTCTAGGAAAGGTTTTGAAGCATTCCTAGACAGGCTTAAAATTTGC GTGTTGGATGTTGGACTCACAATTCAGGGGAACAAAGTCGAAGAGTTGCCGGAGCAGATTTTGTGTTGTATTAGATTAAACGGGATTGATTACATGAATT ACCACCAGTTGTTTAGTGAAGAGCCCACTGATTCTTTAAGTGGCTGA
AA sequence Show only first row Show all	>Potri.008G190500.1 pacid=42807708 polypeptide=Potri.008G190500.1.p locus=Potri.008G190500 ID=Potri.008G190500.1.v4.1 annot-version=v4.1 MGACVSTPEGCARCRLSSSEKIKLRRKGKENTTVKRRSVPPCRDDRSDGHAPAAPPLRLPSSTNPTFEAGNIEEPWFDSASKFESDCDEDFESFPDDVLS LNGFEGASLSSIASGRVANHGDYNNVNMQDSSFTDQMQQAGDLSGNSTHGPVSNFTKQSNIQVLNSDYVDSLSKSDGLSNEVKQPVFLDEITSVDENAGK EEGLLDICGTIPGNCLPCLASAVPSVEKRRSLSSSSPSARKKGALKPPFKWKEGNSSNTLFSSKTILHRPQAGSQVPFCPVEKKMLDCWSQIEPCSFKIR GKNYFRDKKKEFAPNCAAYYPFGVDVFLSPRKIDHIARFVNLPAINSAGKVPPILVVNVQIPLYPAAIFQSETDGEGANFVLYFKLSDSYSKELPTHFQE SIRRLIDDEVERVKGFRVDTTIPFRERLKILGRVANVEDLHLSAAERKLMQAYNEKPVLSRPQHEFYLGHNYFEIDIDMHRFSYISRKGFEAFLDRLKIC VLDVGLTIQGNKVEELPEQILCCIRLNGIDYMNYHQLFSEEPTDSLSG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G59650		CW14	Protein of unknown function (D...		Potri.008G190500 [exp]	0	1
AT3G21620			ERD (early-responsive to dehyd...		Potri.014G156100 [exp]	12.00	0.6445
AT5G25265			unknown protein		Potri.018G023100 [exp]	27.56	0.6712
AT2G15730			P-loop containing nucleoside t...		Potri.004G143300 [exp]	41.71	0.6607
AT4G20300			Protein of unknown function (D...		Potri.003G157500 [exp]	56.38	0.6587
AT3G21710			unknown protein		Potri.002G230300 [exp]	75.16	0.6377
AT5G10200			ARM-repeat/Tetratricopeptide r...		Potri.005G076300 [exp]	125.05	0.6171
AT5G43710			Glycosyl hydrolase family 47 p...		Potri.008G160900 [exp]	126.49	0.5986
AT2G03640			Nuclear transport factor 2 (NT...		Potri.008G096700 [exp]	149.18	0.6031
AT1G76630			Tetratricopeptide repeat (TPR)...		Potri.002G001700 [exp]	265.97	0.5673

Compare expression of checked genes

Potri.008G190500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.