Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10417 275 / 9e-89 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G190600.1 pacid=42806822 polypeptide=Potri.008G190600.1.p locus=Potri.008G190600 ID=Potri.008G190600.1.v4.1 annot-version=v4.1 ATGGAGTTGCTTAAACTGTCGAAATTCAAGCTCCAGCTCCAAGCCCTAGCTATCGAGGTCGGAGGTCTCAGGGAGAGAGAACAGTCGGCCACTGAGCAAT GCCGAATTCTAATTCAGAAACAGAAGCAAACAGATGAGGAATACCGCAGACAGTTGCAGGAATTACAATCGGAGTTGGCTTCCTCCAATGAATTGCACCA AAAGCTCCTAAGGAAGGTCAGTTACCTTCAAAATGATAACGCCTTGCTCGAAGACAAGCACAAAGATTTGAAAGGAACAATACAAAGCCTGCTTCAATCG AAAGAAAGTTTTGTAAATTCCTACCAGGAATTAACCTGCGAAATGAAACGTTCGATTGAAGCCGGAAATAGAAAGCTCATTGTCCTATCAGAGAAGATAA ACTCTCACCTGTCTTTATTTGATTCCATAGAAAGAGAGGCTTTGTCTATCAAGCAACTTGTGGATAAAGTGCAACTCCTTGTTAGTGAAAAAGAGGGAGT AGTGGCTGGCTTACGGAGCAAGATGGACAAGGTTTCTGCTTTTGAAAATGTATTTTTTGAAAGGATCCGCAACTTGGAAAATAGATTAAAAGGTGATGAG GATGAGTTCCGAAGAAAGGACAGAATCATTTCAGAGCTAGAAGAGCAGCTGGAAGTGGCAAAACTTAATAACAGATGTCAAACTCAAATCGAAGAGCTTC AGAAAACTCTATTTGCAAAGGATGCAGTAATACAGAATCTAATTTCTGAGAAAGAGGCATTGCACTGTGAAGTGGGGGGTTTAGCAATAATATTACAGAA GATTCAGGAGACTGTTGTAAATATGAATGAAGAGGATAAAAGGTTATTCTCCTCGTTACTAGAGTGCCAAGGAGACTGTGATATGGTTGTGACAAAGGAA GATACTGACAGGATTGAAGACTTCGTTCAAAACAGTGGAGAGCCATCTCCCAACAAAGCTTCCAGTATGGGAACAGGAGAAAATCGAGGTTGGGGGCATA ATTCAGATGGAAACATCTTGCAAGAGGACAATCGCTCCAACTCCAGCGTGGCAGAGCCCACATGTTCTCCCTTGCAGTCACCTTGCTCTGAACTTCACTC TGCAGCTAATGGTCCAAGCATTTCTGTAAACAACGCGAAGGTTAACTGCACCGCAATAGCACACCACTTAGATTCTGAGTGTTCAACGACCCAGGCGGAG ACCTCACAAGATCCATGTTAA
AA sequence Show only first row Show all	>Potri.008G190600.1 pacid=42806822 polypeptide=Potri.008G190600.1.p locus=Potri.008G190600 ID=Potri.008G190600.1.v4.1 annot-version=v4.1 MELLKLSKFKLQLQALAIEVGGLREREQSATEQCRILIQKQKQTDEEYRRQLQELQSELASSNELHQKLLRKVSYLQNDNALLEDKHKDLKGTIQSLLQS KESFVNSYQELTCEMKRSIEAGNRKLIVLSEKINSHLSLFDSIEREALSIKQLVDKVQLLVSEKEGVVAGLRSKMDKVSAFENVFFERIRNLENRLKGDE DEFRRKDRIISELEEQLEVAKLNNRCQTQIEELQKTLFAKDAVIQNLISEKEALHCEVGGLAIILQKIQETVVNMNEEDKRLFSSLLECQGDCDMVVTKE DTDRIEDFVQNSGEPSPNKASSMGTGENRGWGHNSDGNILQEDNRSNSSVAEPTCSPLQSPCSELHSAANGPSISVNNAKVNCTAIAHHLDSECSTTQAE TSQDPC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10417			unknown protein		Potri.008G190600 [exp]	0	1
AT1G71840			transducin family protein / WD...		Potri.013G116900 [exp]	1.73	0.9331
AT5G06220			LETM1-like protein (.1.2)		Potri.001G187100 [exp]	2.44	0.9154
AT2G32540		ATCSLB4, ATCSLB...	CELLULOSE SYNTHASE LIKE B4, ce...		Potri.014G155401 [exp]	3.16	0.9042
AT2G45740		PEX11D	peroxin 11D (.1.2.3)		Potri.009G133900 [exp]	3.31	0.8936
AT1G73240			unknown protein		Potri.003G213050 [exp]	4.00	0.9058
AT4G39460		SAMC1, SAMT1	SAM TRANSPORTER1, S-adenosylme...		Potri.005G197200 [exp]	4.58	0.9024
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Potri.015G111884 [exp]	5.38	0.8806
AT5G09380			RNA polymerase III RPC4 (.1)		Potri.006G143500 [exp]	5.47	0.8966
AT5G45160			Root hair defective 3 GTP-bind...		Potri.012G116050 [exp]	5.83	0.8892
AT3G47630			unknown protein		Potri.001G076200 [exp]	7.48	0.8553

Compare expression of checked genes

Potri.008G190600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.