Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02070 293 / 3e-91 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) AT3G24495 124 / 5e-32 ATMSH7, MSH7, MSH6-2 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) AT3G18524 100 / 8e-24 ATMSH2, MSH2 MUTS homolog 2 (.1) AT4G25540 99 / 2e-23 ATMSH3, MSH3 homolog of DNA mismatch repair protein MSH3 (.1) AT4G17380 93 / 2e-21 MSH4, ATMSH4 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) AT3G20475 81 / 4e-17 ATMSH5 MUTS-homologue 5 (.1) AT3G24320 62 / 9e-11 CHM1, ATMSH1, CHM, MSH1 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) AT5G54090 44 / 6e-05 DNA mismatch repair protein MutS, type 2 (.1) AT2G21790 43 / 0.0001 ATRNR1, RNR1, CLS8, RIBONUCLEOTIDEREDUCTASE,REDUCTASEPROTEINR1, R1, RIBONUCLEOTIDEREDUCTASE, REDUCT CRINKLY LEAVES 8, RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1, ribonucleotide reductase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G121701 [exp] 357 / 6e-115 AT4G02070 1402 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.006G156314 [exp] 120 / 1e-30 AT3G24495 1348 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.006G159200 [exp] 118 / 4e-30 AT3G24495 1372 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.015G142900 [exp] 99 / 2e-23 AT4G25540 1313 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Potri.001G156200 [exp] 98 / 5e-23 AT4G17380 1226 / 0.0 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Potri.012G060000 [exp] 95 / 7e-22 AT3G18524 1438 / 0.0 MUTS homolog 2 (.1) Potri.011G089500 [exp] 81 / 4e-17 AT3G20475 1264 / 0.0 MUTS-homologue 5 (.1) Potri.010G065000 [exp] 59 / 9e-10 AT3G24320 1670 / 0.0 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) Potri.012G005000 [exp] 43 / 0.0002 AT5G54090 847 / 0.0 DNA mismatch repair protein MutS, type 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010010 [exp] 305 / 9e-96 AT4G02070 1559 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Lus10017724 [exp] 132 / 6e-35 AT3G24495 1267 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Lus10033095 [exp] 131 / 2e-34 AT3G24495 1138 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Lus10005743 [exp] 107 / 4e-26 AT4G25540 1305 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Lus10027452 [exp] 101 / 6e-25 AT4G25540 447 / 1e-148 homolog of DNA mismatch repair protein MSH3 (.1) Lus10042967 [exp] 96 / 4e-22 AT3G18524 1479 / 0.0 MUTS homolog 2 (.1) Lus10007489 [exp] 93 / 3e-21 AT4G17380 1205 / 0.0 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Lus10025030 [exp] 93 / 3e-21 AT4G02070 350 / 7e-104 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Lus10028966 [exp] 89 / 7e-20 AT4G17380 413 / 3e-137 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Lus10032469 [exp] 89 / 1e-19 AT3G18524 1449 / 0.0 MUTS homolog 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00488 [poplar] [flax] MutS_V MutS domain V
Representative CDS sequence Show only first row Show all	>Potri.008G191051.1 pacid=42807543 polypeptide=Potri.008G191051.1.p locus=Potri.008G191051 ID=Potri.008G191051.1.v4.1 annot-version=v4.1 ATGAGCTGCTGCGTTCATCCAAAAAGGGCTTCTACAGGTATTGGACTCCCAAGTATAAAGAAGTTCTTAGGAGAGCTCTCACAGGTTGAATCTGAAAAGG AGTCGGCATTGAAGAGCATTTTGCAGAGGTTAATTGTGCGTTTTTGCAAGTACCATGACAAGTGGAGACAATTAGTTTCTGCAACTGCAGAACTGGATGT TTTGATCAGTCTGGCAATTGCAAGTGGCTATTATGAAGGACCTGCATGTCGTCCAACCATCGTAGGTTCATCATTGTCAAGTGAAGTACAAGTACCATGC CTTTCTGCAAAACTATTAGGACACCCTGTTCTTAGGAGCGACTCTTTGGGAAAGGGTGCATTTGTCCCAAATGACATTAGTATTGGGGGTTCTGGTTGTG CCGGCTTTATCCTTCTCACTGGTCCTAACATGGGTGGAAAATCTACTCTTCTTCGGCAAGTTTGTTTGGCTGTGATTCTGGCCCAGATTGGAGCCGATGT CCCTGCTGAAAGCTTTGAGTTGTCTCCTGTTGACCGCATCTTTGTCAGAATGGGTGCAAAAGATCATATTATGGCAGGCCAGAGTACATTTTTGACAGAG CTTTCAGAAACTGCATTGATGCTGGGCCGGCCAGCTAGCATTGGAGTCCAAGGTTCTGTCACACTCGTTATGACATTTGATTCACCAGAGGCTGAACAGC GTAACAAAGACATATACGGACAGGCCGGGGCTATTACTTTTCCACAAAACTTGTTTTAA
AA sequence Show only first row Show all	>Potri.008G191051.1 pacid=42807543 polypeptide=Potri.008G191051.1.p locus=Potri.008G191051 ID=Potri.008G191051.1.v4.1 annot-version=v4.1 MSCCVHPKRASTGIGLPSIKKFLGELSQVESEKESALKSILQRLIVRFCKYHDKWRQLVSATAELDVLISLAIASGYYEGPACRPTIVGSSLSSEVQVPC LSAKLLGHPVLRSDSLGKGAFVPNDISIGGSGCAGFILLTGPNMGGKSTLLRQVCLAVILAQIGADVPAESFELSPVDRIFVRMGAKDHIMAGQSTFLTE LSETALMLGRPASIGVQGSVTLVMTFDSPEAEQRNKDIYGQAGAITFPQNLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Potri.008G191051 [exp]	0	1
AT3G19640		MRS2-3, MGT4	magnesium transporter 4 (.1)		Potri.001G291932 [exp]	2.00	0.8603
AT3G04460		PEX12, ATPEX12,...	ABERRANT PEROXISOME MORPHOLOGY...		Potri.013G047800 [exp]	4.00	0.7934
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Potri.008G216800 [exp]	4.35	0.7569
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Potri.008G190950 [exp]	5.47	0.8077
					Potri.015G116300 [exp]	6.92	0.7976
AT3G13750		BGAL1	beta-galactosidase 1, beta gal...		Potri.006G144500 [exp]	7.48	0.7390
AT3G21880	CO	COL12	B-box type zinc finger protein...		Potri.017G039301 [exp]	8.36	0.7962
AT5G37630		EMB2656	EMBRYO DEFECTIVE 2656, ARM rep...		Potri.004G085500 [exp]	8.66	0.7421
AT1G60890			Phosphatidylinositol-4-phospha...		Potri.001G211200 [exp]	8.94	0.7549
AT1G15215		SHH1, DTF1	SAWADEE homeodomain homolog 1,...		Potri.018G046200 [exp]	9.79	0.7465

Compare expression of checked genes

Potri.008G191051 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.