Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CKI1.6
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47430 746 / 0 CKI1 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) AT2G17820 210 / 3e-55 AHK1, ATHK1 histidine kinase 1 (.1) AT1G27320 116 / 4e-26 AHK3 histidine kinase 3 (.1) AT2G01830 114 / 3e-25 CRE1, AHK4, WOL1, WOL, ATCRE1 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) AT5G35750 103 / 4e-22 AHK2 histidine kinase 2 (.1) AT5G10720 90 / 6e-18 CKI2, AHK5 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) AT2G40940 73 / 6e-13 ERS1 ethylene response sensor 1 (.1) AT1G66340 69 / 2e-11 AtETR1, EIN1, ETR1 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT3G04580 48 / 4e-05 EIN4 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) AT4G18130 46 / 0.0002 PHYE phytochrome E (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G121500 [exp] 2018 / 0 AT2G47430 753 / 0.0 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Potri.013G009700 [exp] 734 / 0 AT2G47430 572 / 0.0 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Potri.007G056400 [exp] 147 / 1e-35 AT2G17820 1475 / 0.0 histidine kinase 1 (.1) Potri.005G111700 [exp] 143 / 2e-34 AT2G17820 1435 / 0.0 histidine kinase 1 (.1) Potri.001G057400 [exp] 124 / 2e-28 AT1G27320 1384 / 0.0 histidine kinase 3 (.1) Potri.003G171000 [exp] 113 / 4e-25 AT1G27320 1425 / 0.0 histidine kinase 3 (.1) Potri.014G164700 [exp] 111 / 2e-24 AT5G35750 1359 / 0.0 histidine kinase 2 (.1) Potri.010G102900 [exp] 109 / 5e-24 AT2G01830 1381 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.008G137900 [exp] 108 / 1e-23 AT2G01830 1390 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033746 [exp] 679 / 0 AT2G47430 615 / 0.0 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Lus10031985 [exp] 663 / 0 AT5G63890 752 / 0.0 HISTIDINE BIOSYNTHESIS 8, histidinol dehydrogenase (.1.2) Lus10031600 [exp] 657 / 0 AT2G47430 624 / 0.0 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Lus10035113 [exp] 464 / 3e-149 AT2G47430 400 / 1e-125 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Lus10029849 [exp] 389 / 3e-116 AT2G47430 489 / 2e-153 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Lus10041891 [exp] 193 / 7e-50 AT2G17820 1561 / 0.0 histidine kinase 1 (.1) Lus10028438 [exp] 137 / 2e-32 AT2G17820 1553 / 0.0 histidine kinase 1 (.1) Lus10037032 [exp] 118 / 2e-26 AT1G27320 1094 / 0.0 histidine kinase 3 (.1) Lus10035114 [exp] 109 / 8e-26 AT2G47430 132 / 2e-34 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Lus10030772 [exp] 115 / 9e-26 AT2G01830 1282 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [poplar] [flax] CheY PF00072 [poplar] [flax] Response_reg Response regulator receiver domain CL0025 [poplar] [flax] His_Kinase_A PF00512 [poplar] [flax] HisKA His Kinase A (phospho-acceptor) domain CL0025 [poplar] [flax] His_Kinase_A PF02518 [poplar] [flax] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Representative CDS sequence Show only first row Show all	>Potri.008G191100.1 pacid=42808073 polypeptide=Potri.008G191100.1.p locus=Potri.008G191100 ID=Potri.008G191100.1.v4.1 annot-version=v4.1 ATGAAGCTCAGCTCATTGATAGCGTCAAGGCCTGTTCTCATCTTCATCATTCTGGCAATTGGAGTTGTGCTACTCCCTTGTGTAGTGGTACCATGGTGGT ATAATATGATCAAACAGATGCAGAAGCACATGGATTTCAATGCCCATGTTGTTCAATCTGGATTGGTATCTGAAATTGAGAACATAGCTAAATTATTGCA CCCTATAAATTCATCTGCAATAAATTTAGCAAGAGTTATGAGTTCCTCCATCAATGGAAGCATACTCTCATCATACGATGTTGAGAATAAGGTAGCTCCC TCATTGTTTCAAGCATTTCCAGTAATTCCTTTCATATCACAGATTTCATATATTGGACTGGGAGGTCTTTTCTTCTCATACTATTATGAAGGAAACCAAG TATTTGCTATGTACTCTAACTCTACAGCTTCAAATGCGAGGAACTTTTCTTGGTATAGACAACCTGTAGATTCAGACACAGGAAAAGTATATGGAGATGC AGTTAAAACCCTTCCTTTCATTACAACCAATGCAAGTTGGATTGAGCAAGCATTAAATAGTAGTCAAGGGTATGCATCATTTGAGAGTGGATGGAACGGT GCTCAAGATCCTCTATTCCTTAACACAGTTAGTTTACATGGACAAGCAGTCCTCTCTTTAGGGTTTTCGGCTAAAGCATTAACTAGTTTCTTCAACAACG TAGAACTTTATGGTGGGAGCTTGTATTTGGCTACCCAATCCGGCAAAGTTCTTGTAGGAGGACTGCCTAACACTCAAATTGTGATAAAGGAAAATTCAGT TTCTCTATACATGACAAAACTGAATGGTGATCAAATTGATCACGTTGGAAATGTTTCATGCATGCCGAACAATGGCAAACTACAAGATTCAGTGTTGTAC CTTGAGGAAGCAAAATACAGAGTTTTATGCTCCCAGGTTGAAATTGTGGGAGTGCAATCGGTATATGCGTTGGCTTTCCCATACAATGGACTAGCAAGCA GTGTTAACAGGAGCATCGAAATTTCCCTCGTTCTATTCATAATAATGATTGCTGCGATTTTCATTTCGATTGTTAGTTTCATATTGCTAGTGGTTAGGGC TGCAGGAAGGGAAATCCACTTGTGTTCAGCACTAATAAAGCAAATGGAAGCAACGCAACAAGCAGAACGAAAGAGCATGAATAAGAGTCTTGCATTTGCT AGTGCTAGCCATGACATTCGAGCGGCTTTAGCAGGCATTACTGGTTTGATAGAGATATGCTATGCAGAAGCGCGTGCAGGTTCTGAGTTAGATACAAATT TACAACAAATGGATGATTGCACAAAAGACCTAGTAGGTTTGTTGAATTCTATTCTTGATACCAGCAAAATTGAAGCCGGCAAAATGCAACTTGAAGAAGA AGAATTTGATTTAGCCAAGCTTCTTGAAGATGCAGTTGATTTGTATCATCCTGTGGGCATGAAAAAAGGTGTAGATGTGGTGCTTGACCCCTATGATGGT TCCATTCTCAAACATTCTCGAGTGAAAGGCGACAGGGTAAAACTAAAGCAAGTCCTTTGCAATTTACTTAGCAATGCTGTTAAGTTTACATTTGAGGGGC ATGTATCAGTTCGAGCCTGGACTCAAAAACCCAGTTTAGAGAACAAGATAATCGCTTCCAATCAGAATGGTTTGTGGAGATGTTTTTTATGCCTTTTTTC CAAGAACAAAAAAGAATTTGATGAAGTGAAGCAAAAACAATGCTCCATTGAATTTGTATTTGAGGTGAATGATACAGGTAAAGGAATTCCGAGAGAAAAA CAAAAATCAGTGTTTGAGAATTTTGTTCAAGTCAAAGAAACAGCTCTTGGACAAGGAGGAACTGGCTTAGGACTTGGCATCGTTCAATCTTTGGTGCGTC TAATGGGAGGAGAAATAGGAATCGTGAATAAAGAGAATGGCAAGAAGGGAACTTGCTTCAAGTTCAATGTTTTCCTTGACATATGCGAGATACCTTCAGC ATATATAAAAAATGCTGAAGTTGAGATTGAAGGGGATTCCATGCCTGATGGTGAACTTAACTATTCGGTGCTGCCTATTCAAACTCCTTCTCCAGGCCTA GTGATTCGCACCCCTAGTCCTAGGCTGTCTATACTTGGTTCTAGTCCCAAGATTGAAGGATCCCATGTTGTTCTGCTGATTCAAAATGAAGAGCGGCTAA GAAGTTCACATAAATATATAGAGGGTTTGGGGATAAAAGCATCATCTGTGAAGCAATGGAAGCATCTTCACTCTACCCTAAAAAGGATAAAAGTCAGGCA GAATGTTTCACCATATGGTTCTTCAGGAAAATCTGATTTGGGCTCAAGAAGTGACCATTTTAACTCTAGATCAATGAAGGATGTGCCTTTAAATTCCATG GACGGGATAGATCAAAAACCATCCGCAAGTAGAAGTAGTAATCTTAGAGGTGCATCAGGCTTTGTATTGCTTGTGATTGATGCTGGTGCTGGACCATTTC AGGAACTTTGTAGAGTCGTTGCTGAATTTAAAAGAGACCTTCCTAGCAGTTGCTACAAGGTTGTTTGGCTGGATAAACCAACTTCACGAAGTATCAATTT GAGAGGCTTTGAACATGACTTGATCAATCCAAGGGACGACATTTTGTTGAAACCATTTCATGGTTCTCGCTTGTATCAAGTGATACGACTTCTACCTGAA TTCGGGGGTCATGAACTTATTTCCAGATCAAAGAGAGAAAATGCAATCCAAGCCACAAATGCTCTTAAAGATCCTGGTTCATCTTCATCAACACATTCAC AAGGAACAAAGTTAAAGGTTCCATCAACTTGTGAAAACTCATTTCAACAAGTGGACTCACAAGCAGAAGGCAGCTCAAAAAATGAAAAAAACAGGAAGAA TCCTTTGTTAGATGATCCAGATCATTCTCATGTTAAATCCAAATCAAGACAGTCTCCAACTGAAAGGCTACCGGTTAGATCATCAGAGATCCAAGAAGCA CGTGGTAATCCAAGCAAAGACAAATCCTTAAGCGGGTTGAAATTATTGGTCGTTGATGATAATGAAATATCCCGCAAAGTGACCAGGCACATTCTTAAAG GGCATGGTGCAACTGTTGAGGTTTGTGAAAATGGGGAGGAAGCTTTCCAACTAGTTCGCATAGGTCTACACAACCAAAGGGAACATAGCCACTCTATTGT GCTTCCTTATGACTACATATTAATGGACTGCGAGATGCCAAAAATGGATGGGTGTGAAGCAACAAGACAGATAAGAAAAGAGGAGAAGTTTTATGGCGTT CACATCCCTATCTTAGCATTCTCAGCAGATAACTCAGGAGGTCAAGGTAAAAAGATGAAGGAGGCTGGAACAGATGGTCGAGTGAACAAAAAAATCAATA TGGAACAGCTGGAGGAGACCATCAGAAACATTCAACAAAAAAGAATGCATCTTTAA
AA sequence Show only first row Show all	>Potri.008G191100.1 pacid=42808073 polypeptide=Potri.008G191100.1.p locus=Potri.008G191100 ID=Potri.008G191100.1.v4.1 annot-version=v4.1 MKLSSLIASRPVLIFIILAIGVVLLPCVVVPWWYNMIKQMQKHMDFNAHVVQSGLVSEIENIAKLLHPINSSAINLARVMSSSINGSILSSYDVENKVAP SLFQAFPVIPFISQISYIGLGGLFFSYYYEGNQVFAMYSNSTASNARNFSWYRQPVDSDTGKVYGDAVKTLPFITTNASWIEQALNSSQGYASFESGWNG AQDPLFLNTVSLHGQAVLSLGFSAKALTSFFNNVELYGGSLYLATQSGKVLVGGLPNTQIVIKENSVSLYMTKLNGDQIDHVGNVSCMPNNGKLQDSVLY LEEAKYRVLCSQVEIVGVQSVYALAFPYNGLASSVNRSIEISLVLFIIMIAAIFISIVSFILLVVRAAGREIHLCSALIKQMEATQQAERKSMNKSLAFA SASHDIRAALAGITGLIEICYAEARAGSELDTNLQQMDDCTKDLVGLLNSILDTSKIEAGKMQLEEEEFDLAKLLEDAVDLYHPVGMKKGVDVVLDPYDG SILKHSRVKGDRVKLKQVLCNLLSNAVKFTFEGHVSVRAWTQKPSLENKIIASNQNGLWRCFLCLFSKNKKEFDEVKQKQCSIEFVFEVNDTGKGIPREK QKSVFENFVQVKETALGQGGTGLGLGIVQSLVRLMGGEIGIVNKENGKKGTCFKFNVFLDICEIPSAYIKNAEVEIEGDSMPDGELNYSVLPIQTPSPGL VIRTPSPRLSILGSSPKIEGSHVVLLIQNEERLRSSHKYIEGLGIKASSVKQWKHLHSTLKRIKVRQNVSPYGSSGKSDLGSRSDHFNSRSMKDVPLNSM DGIDQKPSASRSSNLRGASGFVLLVIDAGAGPFQELCRVVAEFKRDLPSSCYKVVWLDKPTSRSINLRGFEHDLINPRDDILLKPFHGSRLYQVIRLLPE FGGHELISRSKRENAIQATNALKDPGSSSSTHSQGTKLKVPSTCENSFQQVDSQAEGSSKNEKNRKNPLLDDPDHSHVKSKSRQSPTERLPVRSSEIQEA RGNPSKDKSLSGLKLLVVDDNEISRKVTRHILKGHGATVEVCENGEEAFQLVRIGLHNQREHSHSIVLPYDYILMDCEMPKMDGCEATRQIRKEEKFYGV HIPILAFSADNSGGQGKKMKEAGTDGRVNKKINMEQLEETIRNIQQKRMHL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47430		CKI1	CYTOKININ-INDEPENDENT 1, Signa...		Potri.008G191100 [exp]	0	1	Pt-CKI1.6
AT5G59990			CCT motif family protein (.1.2...		Potri.001G233600 [exp]	2.44	0.9450
AT3G28150		AXY4L, TBL22	ALTERED XYLOGLUCAN 4-LIKE, TRI...		Potri.011G144100 [exp]	13.26	0.9457
AT1G15780			unknown protein		Potri.001G033400 [exp]	15.65	0.9359
AT3G04900			Heavy metal transport/detoxifi...		Potri.004G144200 [exp]	18.65	0.9131
AT4G32700		TEB	TEBICHI, helicases;ATP-depende...		Potri.018G036600 [exp]	21.97	0.8972
AT1G54870			NAD(P)-binding Rossmann-fold s...		Potri.010G092400 [exp]	34.46	0.9385
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Potri.006G158700 [exp]	36.33	0.9353
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.004G026000 [exp]	37.22	0.8847
AT3G21720		ICL	isocitrate lyase (.1)		Potri.017G036900 [exp]	43.47	0.9351	ICL1.1
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Potri.019G004400 [exp]	48.29	0.9350

Compare expression of checked genes

Potri.008G191100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.