Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27210 473 / 5e-160 ARM repeat superfamily protein (.1) AT5G62580 330 / 2e-104 ARM repeat superfamily protein (.1) AT1G59850 289 / 3e-90 ARM repeat superfamily protein (.1) AT2G07170 198 / 4e-54 ARM repeat superfamily protein (.1) AT4G27060 170 / 3e-44 CN, SPR2, TOR1 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) AT1G50890 123 / 5e-29 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G038900 [exp] 956 / 0 AT1G27210 480 / 9e-163 ARM repeat superfamily protein (.1) Potri.015G069200 [exp] 427 / 7e-142 AT5G62580 366 / 9e-119 ARM repeat superfamily protein (.1) Potri.012G074400 [exp] 400 / 3e-131 AT5G62580 332 / 9e-106 ARM repeat superfamily protein (.1) Potri.006G079500 [exp] 203 / 9e-56 AT2G07170 793 / 0.0 ARM repeat superfamily protein (.1) Potri.001G421200 [exp] 132 / 5e-32 AT4G27060 884 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Potri.011G136700 [exp] 123 / 5e-29 AT4G27060 855 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010730 [exp] 558 / 0 AT1G27210 459 / 8e-155 ARM repeat superfamily protein (.1) Lus10036675 [exp] 425 / 9e-143 AT1G27210 353 / 3e-115 ARM repeat superfamily protein (.1) Lus10033129 [exp] 340 / 2e-108 AT5G62580 507 / 8e-174 ARM repeat superfamily protein (.1) Lus10036647 [exp] 329 / 3e-104 AT5G62580 496 / 2e-169 ARM repeat superfamily protein (.1) Lus10027590 [exp] 199 / 4e-54 AT2G07170 702 / 0.0 ARM repeat superfamily protein (.1) Lus10043053 [exp] 157 / 6e-40 AT4G27060 891 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10011149 [exp] 132 / 1e-31 AT4G27060 911 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10008545 [exp] 111 / 3e-25 AT2G07170 550 / 0.0 ARM repeat superfamily protein (.1) Lus10040047 [exp] 102 / 3e-22 AT4G27060 801 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10019616 [exp] 91 / 6e-20 AT4G27060 254 / 2e-78 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF02985 [poplar] [flax] HEAT HEAT repeat CL0020 [poplar] [flax] TPR PF12765 [poplar] [flax] Cohesin_HEAT HEAT repeat associated with sister chromatid cohesion
Representative CDS sequence Show only first row Show all	>Potri.008G192100.1 pacid=42807492 polypeptide=Potri.008G192100.1.p locus=Potri.008G192100 ID=Potri.008G192100.1.v4.1 annot-version=v4.1 ATGTCGCCTCCCCAGAAACCACCAGCAGTTACCAACGATCTCAAGCCCCGTGTCATAGCCTGTCTCAACAAGCTCTCCGACCGTGACACTCTCCTTGTCG CCGCCACAGAGCTCGAGTCCATAGCTAAGAACTTAACCACTCCAGACTCTTTCTTACATTTCCTAAACTGCATTCATAACACTGATTCTTCCTCTAAATC TCCTGTCCGCAAACAATGCGTCTCTCTTTTAACTCTTCTATCTCGCTCCCACGGCAACTCTCTCTCACCCCACCTCTCCAAAATGATCTCCACCATCACC CGCCGACTTCGCGACCCCGACTCCGCAGTCCGCTCTGCCTGCGTCGAAGCCACCTCGGCCATGTCTTCTCAGATCACGGACCCACCCTTCTCAACTCTCT CCAGGCCGCTTATTGACTTGTTGACTGTTGACCAGGATTTCAACGCTCAGATCGGGGCGGCCTTGTGTTTGGCAGCGGCCATAGAGGCAGCGCCAGAGCC AGAGGTGGAGCACTTGAGGAAGGTGCTGCCGAGGCTTGGGAAGCTGGTTAAGGGAGAGGGGTTTAAAGCAAAGGCGGCGTTGCTGAGTTTGATTGGGAGC ATTGTTGGCGTTGGTGGGGCGTCAAGTAAGGGGCTTTTAGATTGGTTAGTCCCGTGTTTGGTTGAGTTTTTGAGCAGTGAAGATTGGACAGCCAGAAAAG CTGCTGCTGAGGCCTTAGGGAAGGTGGCGTCAATGGAAAAGAAGTTGGCGAAGGAACATAAAGCTACCTGTTTGACTTCTCTAGAGACCAGGAGGTTTGA TAAGGTGAAGGTGGTTAGGGAGACTATGAATCGCACATTGGAGTTGTGGAAGGAGGTGCCAGGCATTTCTGAGGAAATTTCAGTTCCATCTCAGTCTACA TGTTCTTCTATAGATAATGCAGTTGGTATATGCATCTCCACCACCTCCAAAAATTCCAAAGACATCGGTTTCAAAACTCCTTTATCTAAGAAAACAGTCC CCGCAAATAGGTCCCCTCCTCCTGATGCTTCGTTCATGACAGCTGCCAAAAAACAAAGCCCGGCAAAGAGCAATGACAGCAATTCAAAGACAGGAACGTC TCATAAGCTGAGCCATGATAGACATTCAGCTTGGAAAATTGAAATCGCTACACCACCAGGAAAAGCTTGTGGTGATGTTACAGGGCATGATTCTGGAGTT TTGGGATCAGGGCAGAATGTGGATGATACAAATTCCACACCAGAAACAAAACGTGTCCTCTTCAGTAGTATCCTAGTTGACAAACGGCACAAATATGATG GTTTGAAATCTGGGTCGCGCGTGGTTCCAATTCAGGGGGATGAAAACTGTTACAGCAAAGATGTTGAAGTGAGCAGTTCTACTGAAGATTTCTATGAGAA CCATAAAGATTACGAGGATCTGTCTTTGATCCGTGAACAACTTATTCAGATTGAAAACCAGCAATCCAGTCTTTTAGACCTCCTCCAGAGATTCATGGGG AGCTCCCAGAGTGGTATAAATTCTCTCGAGACACGTGTTCACGGCCTGGAGATGGCAGTCAATGAAATTTCTTATGATTTGGCAGTATCAAGTGGAAGGA TTCCTAGAACTGACTCTGTAGAGAACACATGTTGCAAGCTTCCTGGTGCAGAATTCTTAAGTTCCAAGCTCTGGAGGAGAACAGAATGTCGCTCTTCTAC TTCAAGGTTCTCTTCTTCTGGGAACACTCAGTCATTGAATTCTGTTTGCAGTATTCCTGTTAAGAATGCTAGCATTGAAACATACAACCCAGGAAGCCAA AGATCTCAGCGTCAGAGTATGGGTGGATTTGTTGTGGATACGTTGGCAGATGTTTCCAGCGTAAACAGGCAGAGTTCAGGGCTCTGTACAAGTCAAATGG CAAATAACAGAAGTCGAGATGAACCTAAGCAGCAGGTTTCCTCTTAA
AA sequence Show only first row Show all	>Potri.008G192100.1 pacid=42807492 polypeptide=Potri.008G192100.1.p locus=Potri.008G192100 ID=Potri.008G192100.1.v4.1 annot-version=v4.1 MSPPQKPPAVTNDLKPRVIACLNKLSDRDTLLVAATELESIAKNLTTPDSFLHFLNCIHNTDSSSKSPVRKQCVSLLTLLSRSHGNSLSPHLSKMISTIT RRLRDPDSAVRSACVEATSAMSSQITDPPFSTLSRPLIDLLTVDQDFNAQIGAALCLAAAIEAAPEPEVEHLRKVLPRLGKLVKGEGFKAKAALLSLIGS IVGVGGASSKGLLDWLVPCLVEFLSSEDWTARKAAAEALGKVASMEKKLAKEHKATCLTSLETRRFDKVKVVRETMNRTLELWKEVPGISEEISVPSQST CSSIDNAVGICISTTSKNSKDIGFKTPLSKKTVPANRSPPPDASFMTAAKKQSPAKSNDSNSKTGTSHKLSHDRHSAWKIEIATPPGKACGDVTGHDSGV LGSGQNVDDTNSTPETKRVLFSSILVDKRHKYDGLKSGSRVVPIQGDENCYSKDVEVSSSTEDFYENHKDYEDLSLIREQLIQIENQQSSLLDLLQRFMG SSQSGINSLETRVHGLEMAVNEISYDLAVSSGRIPRTDSVENTCCKLPGAEFLSSKLWRRTECRSSTSRFSSSGNTQSLNSVCSIPVKNASIETYNPGSQ RSQRQSMGGFVVDTLADVSSVNRQSSGLCTSQMANNRSRDEPKQQVSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27210			ARM repeat superfamily protein...		Potri.008G192100 [exp]	0	1
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Potri.015G035500 [exp]	4.24	0.8937
AT1G01780	LIM	PLIM2b	PLIM2b, GATA type zinc finger ...		Potri.002G157300 [exp]	9.59	0.8635
AT1G01510		AN	ANGUSTIFOLIA, NAD(P)-binding R...		Potri.014G089400 [exp]	10.19	0.8651
AT5G39420		CDC2CAT	CDC2C (.1)		Potri.017G088200 [exp]	12.32	0.8606
AT3G61415		ASK21	SKP1-like 21 (.1.2)		Potri.002G160600 [exp]	18.00	0.8574
AT2G35330			RING/U-box superfamily protein...		Potri.001G144200 [exp]	18.76	0.8504
AT4G38500			Protein of unknown function (D...		Potri.009G138000 [exp]	19.07	0.8611
AT3G24240			Leucine-rich repeat receptor-l...		Potri.002G070900 [exp]	20.97	0.8560
AT1G76670			Nucleotide-sugar transporter f...		Potri.002G000500 [exp]	25.09	0.8623
AT3G16060			ATP binding microtubule motor ...		Potri.003G053800 [exp]	26.03	0.8649

Compare expression of checked genes

Potri.008G192100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.