Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SNT901
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24190 1330 / 0 SNL3, AtSin3 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) AT3G01320 1139 / 0 SNL1 SIN3-like 1 (.1.2) AT1G70060 948 / 0 SNL4 SIN3-like 4 (.1) AT5G15020 815 / 0 SNL2 SIN3-like 2 (.1.2) AT1G59890 462 / 5e-141 SNL5 SIN3-like 5 (.1.2.3.4) AT1G10450 457 / 2e-139 SNL6 SIN3-like 6 (.1) AT1G24200 182 / 4e-52 Paired amphipathic helix (PAH2) superfamily protein (.1) AT1G70030 156 / 1e-43 Paired amphipathic helix (PAH2) superfamily protein (.1) AT1G24230 125 / 1e-31 Paired amphipathic helix (PAH2) superfamily protein (.1) AT1G24250 112 / 5e-27 Paired amphipathic helix (PAH2) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G038700 [exp] 2305 / 0 AT1G70060 1396 / 0.0 SIN3-like 4 (.1) Potri.001G350200 [exp] 1224 / 0 AT5G15020 1391 / 0.0 SIN3-like 2 (.1.2) Potri.001G316300 [exp] 62 / 2e-10 AT3G01320 86 / 1e-19 SIN3-like 1 (.1.2) Potri.005G008200 [exp] 44 / 6e-05 AT5G15020 66 / 4e-14 SIN3-like 2 (.1.2) Potri.017G056201 [exp] 0 / 1 AT1G24190 0 / 1 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013293 [exp] 1823 / 0 AT1G70060 1454 / 0.0 SIN3-like 4 (.1) Lus10030817 [exp] 1771 / 0 AT1G70060 1426 / 0.0 SIN3-like 4 (.1) Lus10029217 [exp] 1152 / 0 AT1G70060 912 / 0.0 SIN3-like 4 (.1) Lus10032181 [exp] 1124 / 0 AT5G15020 1362 / 0.0 SIN3-like 2 (.1.2) Lus10010729 [exp] 1052 / 0 AT1G70060 1191 / 0.0 SIN3-like 4 (.1) Lus10014504 [exp] 729 / 0 AT3G01320 897 / 0.0 SIN3-like 1 (.1.2) Lus10014505 [exp] 350 / 8e-107 AT5G15020 449 / 2e-144 SIN3-like 2 (.1.2) Lus10029218 [exp] 292 / 3e-88 AT1G24190 270 / 4e-81 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) Lus10030816 [exp] 126 / 6e-33 AT1G59890 140 / 8e-39 SIN3-like 5 (.1.2.3.4) Lus10030814 [exp] 117 / 1e-29 AT1G70060 130 / 2e-35 SIN3-like 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08295 [poplar] [flax] Sin3_corepress Sin3 family co-repressor PF16879 [poplar] [flax] Sin3a_C C-terminal domain of Sin3a protein
Representative CDS sequence Show only first row Show all	>Potri.008G192200.5 pacid=42806747 polypeptide=Potri.008G192200.5.p locus=Potri.008G192200 ID=Potri.008G192200.5.v4.1 annot-version=v4.1 ATGAAGAGGTCAAGAGATGATGTTTACATGGGGTCTCAACTTAAAAGGCCTGTGCTCTCTTCTTCCACTAAAGGCGAAGCTTCTGGGCAACCTCAGATGA TTGGAGGGGGAGGTGGTGGTGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGACAGAAACTGACAACAAATGATGCCTTGGCATATCTCAAGGCTGTCAA GGATATATTTCAAGACAAGAGAGAAAAGTACGATGACTTTCTTGAGGTCATGAAGGATTTCAAAGCTCAAAGAATTGACACTGCGGGTGTCATAGCAAGG GTGAAGGAGTTATTTAAAGGGCACCGCGATTTAATTTTGGGTTTCAATACCTTCTTGCCAAAAGGATATGAGATCACCCTCCCACTGGAAGAAGAACAAC CTCCGCAGAAAAAGCCAGTTGAATTTGAAGAAGCAATTAATTTTGTGAACAAAATTAAGACAAGGTTTCAAGGTGATGATCATGTTTACAAATCTTTTTT AGACATTTTGAACATGTACAGAAAGGAAAATAAGTCCATCAGTGAGGTCTACCAGGAGGTGGCTGCACTTTTTCGAGACCACCATGATCTGCTCTTGGAG TTCACTCATTTCCTTCCTGATTCTTCAGCTGCCGCCAGTGCTCTTTTTCCGTCTGCCAGGAATTCTGCTCCCCGTGACAGAAGTTCTGCCATGCCTACAA TGCGCCAAATGCATGTTGACAAGAAAGAAAGGGCTATGGCCTCACATGCTGAACGTGACATCAGTGTTGACCGTCCCGATCCCGACCATGATAGGGCTAT GATCAGAGCAGATAAGGATCAACGCAGGCGTGTTGAAAAAGAAAAGGAGAGGAGAGAAGACAGAGATAGGAGGGATTGTGAGCGAGATGATAGAGATTAT GATCATGATGGAAATCGAGACTTCAACCAACGATTCCCTCACAAGCGGAAACCTGCTCGTAGAGTTGAAGATTCAGCTGCTGAACAAGGTGGGGATGGTG ATGAGAGCTTCGGAGGAATGAATCCTGTTTCATCAGCTTATGATGATAAAAATGCTGTAAAAAGTGCATTAAGTCAAGAGCTTGCTTTTTGTGACAAAGT CAAGGAGACGTTGCACAATCCTGAAAATTACCAGGAATTTTTGAGATGTCTTCATCTCTATACCAGAGAAATAATCACACGATCAGAGTTGCAATCTTTG GTGGGTGATTTGCTTGGAAAATATCCGGATCTCATGGACGGGTTCAATGAATTCTTGGCACTATGTGAAAAAAAGGAGGGTCTCCTTGCTGGTGTTGTGA GTAAAAAATCACTGTGGAATGAAGGTAATTTACCCAGAGTTTTGAAAGTAGAAGACCGAGATAGAGATCGGGATCGTGAGAGAGATGATGGGGTCAAAGA TAGAGACCGTGAAATCCGAGAAAGGGATAGGCTTGACAAAAGTGTAGCCTTTGGAAATAAGGACACGGGAGGTCACAAAATGTCTTTATTTCCCAGCAAG GATAAGCTTCCAGCAAAACCCATTAATGAACTTGACTTATCTAACTGCGAGCGCTGCACTCCCAGTTATCGGCTTCTACCAAAGAGTTACATGATACCTC CTGCAAGTCAGAGGACCGAGCTTGGTGCTGAAGTACTGAATGATCATTGGGTATCTGTTACTTCAGGAAGTGAAGATTACTCTTTTAAACATATGCGGAA AAACCAGTATGAAGAGAGCTTGTTTCGATGTGAAGATGACAGGTTTGAGCTGGACATGCTGTTAGAATCTGTGAATGTAACCACCAAGCGTGTGGAGGAA TTATTAGAAAAGATCAACAATAACACGATCAAAATGGATAGTCCAATCCGTATTGATGAGCACTTAACAGCTCTGAATCTGAGGTGTGTTGAACGTTTAT ATGGCGACCACGGGCTTGATGTAATGGATGTATTGAGGAAGAACACTTCTCTTGCTTTGCCAGTTATATTAACTCGCTTGAAGCAGAAACAAGAAGAGTG GGCAAGGTGTCGTGCTGATTTTAACAAAGTTTGGGCTGAAATTTATGCCAAAAACTATCACAAATCACTTGATCATCGTAGCTTCTATTTCAAGCAGCAG GATACAAAGAGCTTGAGCACAAAAGCCTTACTGGCGGAGATCAAAGAAATTAGTGAGAATAAGCGCAAGGAAGATGATGTGCTTCTTGCTTTTGCTGCTG GAAACAGACGACCTATTATACCAAATTTGGAATTTGAGTACCTAGATCCTGACACTCATGAGGACTTGTATCAACTCATCAAATATTCATGTGCGGAAGT TTGTACAACTGAACAGTTAGATAAAGTGATGAAGATTTGGACAACCTTCTTAGAACCCATGCTTGGTGTTCCGTCCCGGCCTCAGGGTGCCGAGGACACT GAAGATGTTGTAAAAGCTAAGAATCAGTCTTCTAAAAGTGGAGAGAGTGAAGGCAGCCCTAGTGGTGGTGGTGCGGTCACAAACTCCAAACATTCGAATC CTTCAAGAAATGGAGATGAAAGTATCCAACCTGAACAATCAAGTTCTAGCAGGGCTTGGATGCTAAATGGAGAAAACAGGGTTAAAGAAAATGGTTCTCC TGATGCGGATCACGTGGCTCGCAAAAGTGATACTTCCACAAGCACTCTTCAACATGATAAGGTGCTGATCAATGCAGCTGCAGCTGATGAATTGTCAGGG GTCACTAAACAAGCTCCTTCCAATGACCGACTACTAAATTCAAATGCATCTCTTGTCACTGGGGCAGAGTTAAGTAATGGACGAACTCTTGTTGAATCAG GGCTTAGTGCTACCCCTTCAAGACCAAGTAATGGCACTGTTGAGGGAGGGCTTGGAATAGGTTCGAGTAATGAAATATTACCGTCAACAGAGGGTGGTGA ATTTTCAAGACCCCCTGTATCCACAAATGGGGTGGCAACAGAAGTCATCAAGAGTAACAGATATAATGATGAATCTGCTGCACAATTTAAAATTGAAAGA GAAGAGGGTGAATTATCTCCAAATGGAGATTTTGAGGAGGATAATTTTGCAGTTTATGGAGAAGCTGGTTTGGAGGCAGCGCATAAGGTGAAGGACAGTG CTGTTAGTAGGCAATATCAAGCCAGACAGGGAGAAGAATGTGGAGAGGCAGGGGGGGAGAATGACGCTGATGCTGATGATGAAGGCGGTGAAAGTGCTCA AAGGTCATCAGAGGATAGTGAGAATGCCTCTGAGAATGGTGATGTTTCTGGAAGTGAGTCTGGTGATGGTGAAGATTGCTCTCGGGAAGAGCATGAGGAA GATGGTGACCATGATGAGCATGATAATAAAGCTGAGAGTGAAGGTGAGGCCGAAGGAATGGCTGATGCCCACGATGTTGAAGGAGAAGGAACGATTTTAC CATTTTCAGAACGTTTTCTTCTAAACGTGAAGCCTTTGGCAAAGCATGTCCCCCCTTCATTGCATGACAAAGAAAAAGGTTTTCGGGTTTTCTATGGAAA TGATTCCTTCTATGTGCTTTTTAGGCTTCACCAAACATTATATGAGAGAATACAATCAGCAAAGGTTAATTCATCATCTGCCGAGAGGAAATGGAGAGCT TCAAATGACACTAGTCCTACTGATCTTTATGCCAGATTCATGAGTGCACTTTACAACTTACTTGATGGTTCTTCTGACAATACAAAATTTGAGGATGATT GCCGGGCTATTATTGGGACACAGTCATATGTTCTATTCACATTGGACAAACTAATATATAAGCTTGTCAAACAGCTCCAAACCGTGGCAACGGATGAAAT GGACAACAAGTTGCTCCAACTATATGCATATGAAAAATCAAGGAAACATGGAAGATTTGTGGATATTGTTTGTCATGAAAATGCTCGCGTGCTTCTTCAT GATGAGAACATATATCGTATTGAATGTTCTTCTGCACCAACCCGCTTGTCTATTCAGCTTATGGACTTTGGACACGATAAACCCGAAGTTACTGCTGTTT CCATGGATCCTAATTTTGCATCATATCTGCATAATGATTTCCTCTCTGTTGTTCCCGACAAAAAAGAGAAGCCAGGGATTTTCTTGAAGAGGAATAAACA TAGATATTCAGATGCTGACGAGTGCCAGGCCATGGAAGGGTTTCGGGTTTTGAACGGTTTAGAGTGTAAAATTGCTTGCAATTCCTCAAAGGTGTCCTAT GTTTTAGACACAGAAGATTTTTTGTTCCGACCACAAAAGAAAAGCAAAACTTTGCAGCAGAATGGCTCATGCCACGACGACCAGGCAAAGATTTCCAAAA GAGTACAACGGTTTCACAGACTGCTATCTAGCTCATCATAA
AA sequence Show only first row Show all	>Potri.008G192200.5 pacid=42806747 polypeptide=Potri.008G192200.5.p locus=Potri.008G192200 ID=Potri.008G192200.5.v4.1 annot-version=v4.1 MKRSRDDVYMGSQLKRPVLSSSTKGEASGQPQMIGGGGGGGGGGGGGGGGGQKLTTNDALAYLKAVKDIFQDKREKYDDFLEVMKDFKAQRIDTAGVIAR VKELFKGHRDLILGFNTFLPKGYEITLPLEEEQPPQKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKENKSISEVYQEVAALFRDHHDLLLE FTHFLPDSSAAASALFPSARNSAPRDRSSAMPTMRQMHVDKKERAMASHAERDISVDRPDPDHDRAMIRADKDQRRRVEKEKERREDRDRRDCERDDRDY DHDGNRDFNQRFPHKRKPARRVEDSAAEQGGDGDESFGGMNPVSSAYDDKNAVKSALSQELAFCDKVKETLHNPENYQEFLRCLHLYTREIITRSELQSL VGDLLGKYPDLMDGFNEFLALCEKKEGLLAGVVSKKSLWNEGNLPRVLKVEDRDRDRDRERDDGVKDRDREIRERDRLDKSVAFGNKDTGGHKMSLFPSK DKLPAKPINELDLSNCERCTPSYRLLPKSYMIPPASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEE LLEKINNNTIKMDSPIRIDEHLTALNLRCVERLYGDHGLDVMDVLRKNTSLALPVILTRLKQKQEEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQ DTKSLSTKALLAEIKEISENKRKEDDVLLAFAAGNRRPIIPNLEFEYLDPDTHEDLYQLIKYSCAEVCTTEQLDKVMKIWTTFLEPMLGVPSRPQGAEDT EDVVKAKNQSSKSGESEGSPSGGGAVTNSKHSNPSRNGDESIQPEQSSSSRAWMLNGENRVKENGSPDADHVARKSDTSTSTLQHDKVLINAAAADELSG VTKQAPSNDRLLNSNASLVTGAELSNGRTLVESGLSATPSRPSNGTVEGGLGIGSSNEILPSTEGGEFSRPPVSTNGVATEVIKSNRYNDESAAQFKIER EEGELSPNGDFEEDNFAVYGEAGLEAAHKVKDSAVSRQYQARQGEECGEAGGENDADADDEGGESAQRSSEDSENASENGDVSGSESGDGEDCSREEHEE DGDHDEHDNKAESEGEAEGMADAHDVEGEGTILPFSERFLLNVKPLAKHVPPSLHDKEKGFRVFYGNDSFYVLFRLHQTLYERIQSAKVNSSSAERKWRA SNDTSPTDLYARFMSALYNLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQTVATDEMDNKLLQLYAYEKSRKHGRFVDIVCHENARVLLH DENIYRIECSSAPTRLSIQLMDFGHDKPEVTAVSMDPNFASYLHNDFLSVVPDKKEKPGIFLKRNKHRYSDADECQAMEGFRVLNGLECKIACNSSKVSY VLDTEDFLFRPQKKSKTLQQNGSCHDDQAKISKRVQRFHRLLSSSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Potri.008G192200 [exp]	0	1	SNT901
AT2G47410			WD40/YVTN repeat-like-containi...		Potri.014G121100 [exp]	1.00	0.8878
AT3G17850			Protein kinase superfamily pro...		Potri.015G035600 [exp]	1.41	0.8746
AT1G70060		SNL4	SIN3-like 4 (.1)		Potri.010G038700 [exp]	1.73	0.8598
AT1G63490			transcription factor jumonji (...		Potri.003G126600 [exp]	4.47	0.8321
AT1G77300		ASHH2, CCR1, SD...	LAZARUS 2, CAROTENOID CHLOROPL...		Potri.002G079100 [exp]	10.24	0.7624
AT5G53430		SET29, ATX5, SD...	SET domain group 29 (.1)		Potri.012G013900 [exp]	10.48	0.7858	SDG914
AT5G53440			unknown protein		Potri.012G013800 [exp]	14.14	0.8242
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Potri.001G207700 [exp]	14.49	0.8088
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Potri.001G274900 [exp]	15.49	0.7896
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Potri.016G064100 [exp]	16.88	0.7652	Pt-UBP12.1

Compare expression of checked genes

Potri.008G192200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.