Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23790 572 / 0 Plant protein of unknown function (DUF936) (.1) AT1G70340 505 / 1e-174 Plant protein of unknown function (DUF936) (.1) AT3G14170 166 / 7e-45 Plant protein of unknown function (DUF936) (.1) AT1G08760 161 / 7e-42 Plant protein of unknown function (DUF936) (.1) AT4G13370 154 / 1e-39 Plant protein of unknown function (DUF936) (.1) AT3G19610 125 / 5e-30 Plant protein of unknown function (DUF936) (.1) AT2G31920 100 / 5e-22 Plant protein of unknown function (DUF936) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G038600 [exp] 574 / 0 AT1G23790 285 / 1e-91 Plant protein of unknown function (DUF936) (.1) Potri.007G131600 [exp] 164 / 5e-43 AT1G08760 674 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.017G026200 [exp] 162 / 3e-42 AT1G08760 719 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.003G070200 [exp] 147 / 6e-38 AT3G14170 458 / 2e-157 Plant protein of unknown function (DUF936) (.1) Potri.018G072500 [exp] 145 / 9e-37 AT4G13370 719 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.001G294600 [exp] 140 / 4e-35 AT3G19610 177 / 2e-47 Plant protein of unknown function (DUF936) (.1) Potri.009G024800 [exp] 117 / 2e-27 AT2G31920 293 / 1e-91 Plant protein of unknown function (DUF936) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029158 [exp] 558 / 0 AT1G70340 477 / 2e-164 Plant protein of unknown function (DUF936) (.1) Lus10030619 [exp] 400 / 1e-133 AT1G23790 393 / 5e-132 Plant protein of unknown function (DUF936) (.1) Lus10030870 [exp] 400 / 2e-133 AT1G23790 391 / 6e-131 Plant protein of unknown function (DUF936) (.1) Lus10013006 [exp] 375 / 4e-125 AT1G23790 300 / 6e-97 Plant protein of unknown function (DUF936) (.1) Lus10013007 [exp] 281 / 3e-91 AT1G23790 253 / 6e-82 Plant protein of unknown function (DUF936) (.1) Lus10036076 [exp] 166 / 5e-43 AT1G08760 731 / 0.0 Plant protein of unknown function (DUF936) (.1) Lus10026806 [exp] 164 / 1e-42 AT1G08760 732 / 0.0 Plant protein of unknown function (DUF936) (.1) Lus10008138 [exp] 150 / 2e-39 AT3G14170 350 / 8e-117 Plant protein of unknown function (DUF936) (.1) Lus10019398 [exp] 151 / 2e-38 AT4G13370 646 / 0.0 Plant protein of unknown function (DUF936) (.1) Lus10013177 [exp] 149 / 2e-38 AT3G14170 459 / 9e-158 Plant protein of unknown function (DUF936) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06075 [poplar] [flax] DUF936 Plant protein of unknown function (DUF936)
Representative CDS sequence Show only first row Show all	>Potri.008G192300.1 pacid=42806098 polypeptide=Potri.008G192300.1.p locus=Potri.008G192300 ID=Potri.008G192300.1.v4.1 annot-version=v4.1 ATGGCAACATTGGCACCTGGAATTCTGTTGAAGCTTCTAAATGGGATGGACACGGGGACTAAGCCCACCAGTGAACACCGGAGTTCACTCCTGCAGGTAA CTGATATAGTCCCAGCTGAGCTTGACGAGAAAAATCTGTGGCCCAAACATGGGTTTTTCATTAAAGTATCCGATTCTTCACACTCCATCTATGTAAGTCT TCCCTCTGATCAAGATGACTTTGTCCTCAGCGACAAAATGCAGCTTGGCCAGTTCATTTACGTTGACAGACTGGAGCCAGGATCTCCAGTTCCTGTTGTC AAAGGGGCAAAACCACTTCCAGGCAGACACCCATTATTAGGTACCCCTGAACCCCTTATGGGTCTGAGAGGAAAGGGAGAGAGAAGAAGCGAACAAAAAC CACCCAATGGTCAAAGGAGAGGCTCTTGGGAAACAGGGCAAAATGGGGCAGATGGGGTTTCATCTCCAATGGTTTTAAAGCCAGTTCCTTTGGATTTTGA TCAGTGCACGCCGTTGAAACAGCGATTGGCTGTAAGTTGTGTGAAATCAGTATCTCCAATGGTTAGAGGGAGAATTGCCAAAGATGGAGGTACTAATGGG GTGATTAGGTGCTCTTTTGCTGGTGGTGGATCGCTGGCTAAGATGGTGGACACCAAGGGAGAGAGTCCTGCATTGCTCAGGAAAAGTTGTATTGCATCTT CTGCTAATTCCAAGTTTCGAAGAAGCAAGAGTGTCTGTGAACGAGAAGTTCGAATTCCAATTAGCCCCGGCAAATCATTTGAAAAGAAAAGTTCAACTCC CCCGCCGAGTTTAAGAAATGCAAGGGCGGTAGCTTCTCTCAGAATGGGCGGAGATGCACAAAACTCTTCGAATTTAAAGGCCATCTCAGAGATGAAGTCT CAGCCTGGTAATTCAGCCTCTGATAGCAGCACCGGGTTGTCCATGAGTTTACCGGGAAAACTGAACGTATTAAGCAAGGAAGCTGTGCAGCAACGAGATG CAGCTCAGAAGATTGCCCTCCAGGCGCTAAGAGATGCTTCGGCTACTGAAACTTTAGTTCGCTCTCTGAAGATGTTCTCGAATTTGAGCAAATCAGCGAG ACCAGAAGCTCCAGCGGCCTGTTTTGAGCAGTTTCTGGAGTTCCATCTCCATATTGTGAGAGCAGTTACTGATATGGTGTCCATTCAAGCAGCCACTTCA GCTGCTGAAATTGCTCAGGACACAAATATCAAACAGTGTGAAGATTCCTCAATCTTGCATGAAATAGGAAACAATTCCATGGACCAGTGTGGGAATTCAG AATTGAACTCATCGAAGAGAAGAACAGCATTGTACAAGTCAATTGCCAGCTTCCCTGAAAGAAGTAGTGATCAGAGGATGAATTTCGAGAAACTCCTAAG ATCAAATTCTAATCAAAAGGCCTCTTCAGAAAGAAAAGGGCCATTAACTCCACAGGGAAAACTGCTACCTAAAGCTACTATCGAGAATGATGAGAACAAG AGACCAGCCTCTTGCAACTTAAGCAATACAATTAGGTTGGGTAAGCAGATTGAAAATGAAGCTGGAAATTGGTTCATGGACTTCCTAGAGAAAGCTTTAG GAACTGGAATGAAGAAATCTAAAGGAACAGCAGATGAGGATGCTAAGAAAGTTCCTCAATCTCTACTATTGAAGGTTATAAACTGGGTGGATGTAGAACA GACTGACTGCAATAAGCGGCCAGTTCATCCAAAAGCAGCACAGATTGCTCGGAAGTTGAGGATCAAAATGAAGAATCCCTAG
AA sequence Show only first row Show all	>Potri.008G192300.1 pacid=42806098 polypeptide=Potri.008G192300.1.p locus=Potri.008G192300 ID=Potri.008G192300.1.v4.1 annot-version=v4.1 MATLAPGILLKLLNGMDTGTKPTSEHRSSLLQVTDIVPAELDEKNLWPKHGFFIKVSDSSHSIYVSLPSDQDDFVLSDKMQLGQFIYVDRLEPGSPVPVV KGAKPLPGRHPLLGTPEPLMGLRGKGERRSEQKPPNGQRRGSWETGQNGADGVSSPMVLKPVPLDFDQCTPLKQRLAVSCVKSVSPMVRGRIAKDGGTNG VIRCSFAGGGSLAKMVDTKGESPALLRKSCIASSANSKFRRSKSVCEREVRIPISPGKSFEKKSSTPPPSLRNARAVASLRMGGDAQNSSNLKAISEMKS QPGNSASDSSTGLSMSLPGKLNVLSKEAVQQRDAAQKIALQALRDASATETLVRSLKMFSNLSKSARPEAPAACFEQFLEFHLHIVRAVTDMVSIQAATS AAEIAQDTNIKQCEDSSILHEIGNNSMDQCGNSELNSSKRRTALYKSIASFPERSSDQRMNFEKLLRSNSNQKASSERKGPLTPQGKLLPKATIENDENK RPASCNLSNTIRLGKQIENEAGNWFMDFLEKALGTGMKKSKGTADEDAKKVPQSLLLKVINWVDVEQTDCNKRPVHPKAAQIARKLRIKMKNP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G23790			Plant protein of unknown funct...		Potri.008G192300 [exp]	0	1
AT4G12420		SKU5	Cupredoxin superfamily protein...		Potri.003G112700 [exp]	2.44	0.9536	Pt-SKU5.1
AT1G23790			Plant protein of unknown funct...		Potri.010G038600 [exp]	4.00	0.9563
AT4G20900		TDM1, MS5	MALE-STERILE 5, Tetratricopept...		Potri.001G465401 [exp]	4.89	0.9525
AT4G01730			DHHC-type zinc finger family p...		Potri.014G112000 [exp]	6.92	0.9551
AT5G42700	B3		AP2/B3-like transcriptional fa...		Potri.014G031700 [exp]	7.07	0.9513
AT3G12110		ACT11	actin-11 (.1)		Potri.006G192700 [exp]	7.07	0.9471	Pt-ACT2.4
AT3G23670		PAKRP1L ,KINESI...	phragmoplast-associated kinesi...		Potri.002G235500 [exp]	7.34	0.9492	PAKRP1.2
AT1G26850			S-adenosyl-L-methionine-depend...		Potri.010G094100 [exp]	8.94	0.9218
AT4G20900		TDM1, MS5	MALE-STERILE 5, Tetratricopept...		Potri.011G163500 [exp]	9.48	0.9478
AT2G42570		TBL39	TRICHOME BIREFRINGENCE-LIKE 39...		Potri.013G118500 [exp]	11.48	0.9258

Compare expression of checked genes

Potri.008G192300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.