Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ALPHA.9
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59900 673 / 0 AT-E1 ALPHA, AT-E1ALPHA pyruvate dehydrogenase complex E1 alpha subunit (.1) AT1G24180 658 / 0 IAR4 IAA-CONJUGATE-RESISTANT 4, Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) AT1G01090 226 / 4e-70 PDH-E1 ALPHA, PDH-E1ALPHA pyruvate dehydrogenase E1 alpha (.1) AT5G09300 151 / 7e-42 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) AT1G21400 145 / 7e-39 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) AT5G34780 101 / 7e-24 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G038400 [exp] 755 / 0 AT1G59900 651 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Potri.002G179500 [exp] 229 / 8e-71 AT1G01090 672 / 0.0 pyruvate dehydrogenase E1 alpha (.1) Potri.005G064000 [exp] 152 / 2e-41 AT5G09300 654 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) Potri.005G185400 [exp] 139 / 2e-36 AT5G09300 619 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) Potri.002G074900 [exp] 130 / 2e-33 AT1G21400 586 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029216 [exp] 684 / 0 AT1G59900 695 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10013295 [exp] 679 / 0 AT1G59900 687 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10010728 [exp] 675 / 0 AT1G59900 687 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10030820 [exp] 529 / 0 AT1G59900 546 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10002678 [exp] 229 / 4e-71 AT1G01090 688 / 0.0 pyruvate dehydrogenase E1 alpha (.1) Lus10028648 [exp] 157 / 2e-42 AT1G21400 645 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) Lus10018945 [exp] 155 / 3e-41 AT1G21400 644 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) Lus10020895 [exp] 137 / 5e-36 AT5G09300 629 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) Lus10030819 [exp] 127 / 6e-36 AT1G59900 124 / 1e-35 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10033480 [exp] 125 / 3e-32 AT5G09300 558 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [poplar] [flax] THDP-binding PF00676 [poplar] [flax] E1_dh Dehydrogenase E1 component
Representative CDS sequence Show only first row Show all	>Potri.008G192500.1 pacid=42807039 polypeptide=Potri.008G192500.1.p locus=Potri.008G192500 ID=Potri.008G192500.1.v4.1 annot-version=v4.1 ATGGCCTTATCTCACCTAAAATCGTTTTCATCCAGATCCAATCTAGTCAAACCTCTAGCCACCGCCTTTTCTCTCCGCCGTCAGATCTCCACCTCCACCG ATCCCATCACAATTGAGACCTCCGTTCCCTTCGCCACTCACAGATGCGATCCTCCATCACGCACCGTCGAGACCAATCCCCAGGAGCTCCAGTCCTTCTT CCGCGTCATGGCCACGATGCGCCGTATGGAGATAGCCGCCGACTCTCTCTACAAGGCCAAACTCATCCGTGGATTTTGCCACCTCTACGATGGTCAAGAA GCCGTGGCCGTTGGAATGGAGGCTGCAATTACCAAAAATGACAGCATCATTACTGCCTACCGCGACCACTGCACGTTTCTCGGGAGAGGTGGGACCCTCC TGGAGGTGTTTTCGGAGCTGATGGGACGACAGGGCGGTTGTTCGAAGGGGAAAGGTGGGTCCATGCATTTCTATAAGAAGGATAGCGGGTTTTATGGAGG GCATGGTATAGTGGGAGCTCAAGTACCCTTAGGCTGTGGATTGGCATTTGCCCACAAGTATAACAAGGACGACGCCGTCGCTTTTGCTTTGTATGGAGAT GGTGCTGCTAATCAAGGACAGTTGTTCGAGGCCCTTAATATCTCCGCTCTTTGGGATCTTCCTATCATTTTGGTCTGCGAGAATAATCATTATGGAATGG GGACAGCTGAGTGGAGAGCCGCCAAGAGTCCAGCATACTACAAGCGTGGAGACTATGTTCCTGGCTTGAAGGTAGATGGCATGGATGCTTTTGCTGTGAA ACAAGCATGCAAATTTGCAAAGGAGCATGCCTTAAAGAGTGGACCTATTATACTTGAAATGGATACCTACAGGTATCATGGTCATTCTATGTCTGATCCT GGGAGCACCTATCGTACCCGTGATGAGATTAGTGGCGTGAGACAGGAACGTGATCCAATTGAACGAATAAGAAAATTGATATTGACTCATGATCTAGCTA CTGAGAAAGAGCTAAAGGATATTGAAAAAGAAGTGAGAAAACAAGTAGACGAAGCCATTGCTCAAGCTAAGGAAAGTCCCATGCCAGATCCTTCAGAACT TTTCACCAATGTATACGTGAAAGGTCTGGGAGTTGAGGCATATGGAGCTGATAGGAAAGAAGTTAGAGCTGTGCTTCCCTAA
AA sequence Show only first row Show all	>Potri.008G192500.1 pacid=42807039 polypeptide=Potri.008G192500.1.p locus=Potri.008G192500 ID=Potri.008G192500.1.v4.1 annot-version=v4.1 MALSHLKSFSSRSNLVKPLATAFSLRRQISTSTDPITIETSVPFATHRCDPPSRTVETNPQELQSFFRVMATMRRMEIAADSLYKAKLIRGFCHLYDGQE AVAVGMEAAITKNDSIITAYRDHCTFLGRGGTLLEVFSELMGRQGGCSKGKGGSMHFYKKDSGFYGGHGIVGAQVPLGCGLAFAHKYNKDDAVAFALYGD GAANQGQLFEALNISALWDLPIILVCENNHYGMGTAEWRAAKSPAYYKRGDYVPGLKVDGMDAFAVKQACKFAKEHALKSGPIILEMDTYRYHGHSMSDP GSTYRTRDEISGVRQERDPIERIRKLILTHDLATEKELKDIEKEVRKQVDEAIAQAKESPMPDPSELFTNVYVKGLGVEAYGADRKEVRAVLP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Potri.008G192500 [exp]	0	1	ALPHA.9
AT1G74470			Pyridine nucleotide-disulphide...		Potri.009G157700 [exp]	7.74	0.7760
AT4G37970		ATCAD6	cinnamyl alcohol dehydrogenase...		Potri.016G078300 [exp]	20.49	0.7404	SAD
AT2G14110			Haloacid dehalogenase-like hyd...		Potri.017G043900 [exp]	21.21	0.7388
AT5G28830			calcium-binding EF hand family...		Potri.005G052900 [exp]	25.69	0.7106
AT3G62220			Protein kinase superfamily pro...		Potri.014G114200 [exp]	26.72	0.7694
AT4G03520		ATHM2	Thioredoxin superfamily protei...		Potri.019G111200 [exp]	27.23	0.7517	Pt-ATHM1.3
AT5G60760			P-loop containing nucleoside t...		Potri.009G009200 [exp]	27.92	0.7513
AT1G32170		XTH30, XTR4	xyloglucan endotransglycosylas...		Potri.001G136100 [exp]	71.62	0.7159	XTR4.2
AT2G24190		SDR2	short-chain dehydrogenase/redu...		Potri.009G158200 [exp]	72.09	0.6704
AT2G38670		PECT1	phosphorylethanolamine cytidyl...		Potri.006G071000 [exp]	84.46	0.6799

Compare expression of checked genes

Potri.008G192500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.