Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70090 555 / 0 GATL9, LGT8 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) AT1G24170 529 / 0 GATL8, LGT9 GALACTURONOSYLTRANSFERASE-LIKE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT3G28340 461 / 6e-163 GolS8, GATL10 galactinol synthase 8, galacturonosyltransferase-like 10 (.1) AT4G02130 433 / 3e-152 GATL6, LGT10 galacturonosyltransferase 6 (.1.2.3) AT3G62660 431 / 4e-151 GATL7 galacturonosyltransferase-like 7 (.1) AT1G02720 419 / 2e-146 GATL5 galacturonosyltransferase 5 (.1.2) AT3G06260 389 / 7e-135 GolS9, GATL4 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) AT3G50760 387 / 4e-134 GATL2 galacturonosyltransferase-like 2 (.1) AT1G19300 379 / 8e-131 ATGATL1, GATL1, PARVUS, GLZ1 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT1G13250 364 / 3e-125 GATL3 galacturonosyltransferase-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G038300 [exp] 683 / 0 AT1G70090 580 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Potri.002G200200 [exp] 430 / 8e-151 AT3G62660 593 / 0.0 galacturonosyltransferase-like 7 (.1) Potri.014G125000 [exp] 424 / 2e-148 AT3G62660 596 / 0.0 galacturonosyltransferase-like 7 (.1) Potri.014G040300 [exp] 404 / 1e-140 AT1G19300 489 / 1e-174 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.002G132900 [exp] 403 / 3e-140 AT1G19300 483 / 2e-172 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.010G129400 [exp] 402 / 5e-140 AT1G13250 521 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.008G116900 [exp] 400 / 2e-139 AT1G13250 509 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.007G031700 [exp] 400 / 2e-139 AT3G50760 459 / 5e-163 galacturonosyltransferase-like 2 (.1) Potri.005G128000 [exp] 390 / 2e-135 AT3G50760 463 / 9e-165 galacturonosyltransferase-like 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010727 [exp] 542 / 0 AT1G70090 546 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10029215 [exp] 541 / 0 AT1G70090 543 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10030821 [exp] 533 / 0 AT1G70090 533 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10013296 [exp] 533 / 0 AT1G70090 534 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10002440 [exp] 438 / 4e-153 AT3G62660 597 / 0.0 galacturonosyltransferase-like 7 (.1) Lus10018801 [exp] 404 / 2e-140 AT1G19300 518 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10032728 [exp] 403 / 2e-140 AT1G19300 515 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10016301 [exp] 394 / 6e-137 AT1G19300 506 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10012765 [exp] 393 / 3e-136 AT3G06260 519 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Lus10034012 [exp] 388 / 1e-134 AT3G06260 522 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01501 [poplar] [flax] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Potri.008G192600.1 pacid=42806160 polypeptide=Potri.008G192600.1.p locus=Potri.008G192600 ID=Potri.008G192600.1.v4.1 annot-version=v4.1 ATGGTTCATTTCCGGTTACACGCCGGCGTTTTATTCTTCACCGTTGTTGTTCTTTTCCCTTTACTTTGCTTCGGGATTCGTTCAATACCGTCGAGGGAGG GGAATAGCGGTGCAGTTGAAGTGCTCAACGGGTTTCGATTCGCTGAAGCGCCGGAGTATCGTAACGGGAGAGACTGTCCTGTTTTAACAAGCAATGGCCG GTTAGTCTCCTCCTGCGACCCTTCTTTAGTTCACATAGCCATGACTCTTGATTCTGAGTATCTACGAGGCTCAATCGCTGCCGTCCACTCGGTCCTCAAA CACGCTTCCTGCCCAGAAAGCATCTTCTTTCACTTCATTGCGGCAGAGTTCGACCCAGCAAGCCCGCGGGTCCTTTCCCAACTGGTGCGATCCACTTTTC CATCGCTGAATTTCAAGGTCTATATATTCAGAGAAGACACCGTAATCAATCTAATCTCTTCTTCCATCCGGCAAGCACTAGAAAACCCATTAAACTACGC AAGAAACTATCTGGGTGACATGCTGGATCTCTGCGTGGATCGGGTCATTTATCTGGACTCTGATGTCGTAGTTGTCGACGACATACACAAGTTGTGGACC ACAACGCTTAGTGGGGCTCGGGTGATAGGGGCACCCGAGTATTGCCACACAAATCTCACCAAGTATTTCACGGACGTGTTCTGGTCCGACCCGGTGATGT CAGGGACGTTCACCTCGGCGAGGAGGAAGCCGTGTTACTTCAATACTGGGGTGATGGTGATGGACTTGGTGAGGTGGAGAGAAGGGAATTACAGGGGGAG GATAGAGAAGTGGATGGAGGTGCAAAGAAAGACAAGGATATACGAGTTGGGTTCACTGCCACCGTTTTTGCTAGTGTTTGCCGGGGATGTGGAGGCAATG GATCATCAGTGGAACCAGCATGGGCTTGGCGGGGATAACGTGAGAGGGACTTGCAGGTCATTGCATCCCGGTCCAGTCAGTTTGTTGCATTGGAGTGGGA AAGGGAAGCCCTGGGTGAGACTTGATGCTAAAAGACCATGCAAGGTTGATCATCTGTGGGAGCCTTATGATTTGTTCATCAGAAACAATAAAGGTTATTC CTATTCTCGCAATGATCATCGCCGGTCTTCAGGATAA
AA sequence Show only first row Show all	>Potri.008G192600.1 pacid=42806160 polypeptide=Potri.008G192600.1.p locus=Potri.008G192600 ID=Potri.008G192600.1.v4.1 annot-version=v4.1 MVHFRLHAGVLFFTVVVLFPLLCFGIRSIPSREGNSGAVEVLNGFRFAEAPEYRNGRDCPVLTSNGRLVSSCDPSLVHIAMTLDSEYLRGSIAAVHSVLK HASCPESIFFHFIAAEFDPASPRVLSQLVRSTFPSLNFKVYIFREDTVINLISSSIRQALENPLNYARNYLGDMLDLCVDRVIYLDSDVVVVDDIHKLWT TTLSGARVIGAPEYCHTNLTKYFTDVFWSDPVMSGTFTSARRKPCYFNTGVMVMDLVRWREGNYRGRIEKWMEVQRKTRIYELGSLPPFLLVFAGDVEAM DHQWNQHGLGGDNVRGTCRSLHPGPVSLLHWSGKGKPWVRLDAKRPCKVDHLWEPYDLFIRNNKGYSYSRNDHRRSSG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G70090		GATL9, LGT8	GALACTURONOSYLTRANSFERASE-LIKE...		Potri.008G192600 [exp]	0	1
AT5G67250		VFB4, SKIP2	VIER F-BOX PROTEINE 4, SKP1/AS...		Potri.005G141800 [exp]	1.00	0.9347	SKIP2.2
AT2G27080			Late embryogenesis abundant (L...		Potri.009G158900 [exp]	2.44	0.9262
AT5G67250		VFB4, SKIP2	VIER F-BOX PROTEINE 4, SKP1/AS...		Potri.007G048101 [exp]	2.82	0.9282
AT5G47850		CCR4	CRINKLY4 related 4 (.1)		Potri.019G078300 [exp]	4.00	0.8978
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Potri.005G163500 [exp]	4.47	0.9081
AT1G18740			Protein of unknown function (D...		Potri.005G192600 [exp]	5.00	0.9014
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Potri.005G163700 [exp]	6.48	0.8987
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Potri.005G163600 [exp]	6.70	0.8953
AT5G42380		CML39, CML37	CALMODULIN LIKE 39, calmodulin...		Potri.002G001400 [exp]	8.77	0.8931
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Potri.007G134000 [exp]	9.21	0.8574

Compare expression of checked genes

Potri.008G192600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.