Plant FIBer expression Database

Potri.008G192700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G52470 377 / 3e-132 ATFIB1, ATFBR1, SKIP7, FIB1 SKP1/ASK1-INTERACTING PROTEIN, fibrillarin 1 (.1.2)
AT4G25630 367 / 4e-128 ATFIB2, FIB2 fibrillarin 2 (.1)
AT5G52490 315 / 6e-108 Fibrillarin family protein (.1)
AT5G14600 44 / 6e-05 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G147500
[exp]
389 / 7e-137 AT5G52470 462 / 1e-165 SKP1/ASK1-INTERACTING PROTEIN, fibrillarin 1 (.1.2)
Potri.012G144800
[exp]
387 / 5e-136 AT4G25630 463 / 1e-165 fibrillarin 2 (.1)
Potri.018G120500
[exp]
43 / 0.0001 AT5G14600 434 / 1e-153 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014969
[exp]
157 / 2e-46 AT5G52470 310 / 5e-106 SKP1/ASK1-INTERACTING PROTEIN, fibrillarin 1 (.1.2)
Lus10038851
[exp]
150 / 4e-44 AT5G52470 221 / 9e-72 SKP1/ASK1-INTERACTING PROTEIN, fibrillarin 1 (.1.2)
Lus10039260
[exp]
150 / 5e-44 AT5G52470 312 / 3e-107 SKP1/ASK1-INTERACTING PROTEIN, fibrillarin 1 (.1.2)
Lus10027503
[exp]
150 / 5e-44 AT5G52470 313 / 2e-107 SKP1/ASK1-INTERACTING PROTEIN, fibrillarin 1 (.1.2)
Lus10018028
[exp]
44 / 3e-05 ND 41 / 5e-05
Lus10042024
[exp]
38 / 0.0009 ND 38 / 2e-04
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF01269 Fibrillarin Fibrillarin
Representative CDS sequence
>Potri.008G192700.2 pacid=42807083 polypeptide=Potri.008G192700.2.p locus=Potri.008G192700 ID=Potri.008G192700.2.v4.1 annot-version=v4.1
ATGAGACCTCCAATGGCAAGAGGACGTGGTGCTGGTCATGGTCGTGGAGCTTTTAGAGCTCAAAATAATGCGGGGAGAGGTGGTCGTGGTCGTGGAGCTT
TTAGAGCACAAAACAACGCGGGAAGAGGTTTAGGTGTCCGTGGTCGGGGTCGTGGTGGTGGCCGAGGTGGGGCCAATCATCGTGGAGGGATGAGAGGTGG
AAATAAGGCAGTGATAATTCCGCATAGACATGAAGGAGTCTTTATTGCGAAGTCTAAAGATGATGCTCTGCTTACTAAAAGCATGGTCCCTGGTGACACT
AATGAAGATGGGACCAAAGTAGAGTACAGGGTTTGGAATCCTTTCCGATCCAAGCTGGGGGCTGCAATTCGGGAGGGTATTGACAATATATGGATTGTAC
CCGGTGCTCGAGTTCTCTACTTAGGAGCTGCTTCAGGAACCTCCGTCTCTCATGTATCTGACATTGTTGGACCTACGGGAGTAGTGTATGCAGTGGAATT
TTCTCAAAGAAGTGGGAGGGACTTGGTCAACATGGCTAAAAAGAGAACAAATGTCATGCCCATCATTGAGGATGCTAGACATCCATCAAAGTATCGAATG
TTAGTTGGCATGGTAGATGTCATATTTTCAGATGTTGCTCAGCCCGATCAGGCAAGAATATTAGCTTTGAATGCAGCTTATTTCCTCAAAACAGGAGGTC
ATTTTGTGCTCTCAATAAAGGCAAATTGCATCGACTCCACCATGCCTGCTGGCAAAGTATACGATGGTGAAGTTGACAGGTTGAGGGCGGATCTGCTGAA
GCCTGCAGAGATGGTGACATTAGATCGATTTGAGAGAGACCATGCCTGCGTCGTTGGTAGTTACAGGGTGCCAAAGAAACAAAAACCTTCTGCCTAA
AA sequence
>Potri.008G192700.2 pacid=42807083 polypeptide=Potri.008G192700.2.p locus=Potri.008G192700 ID=Potri.008G192700.2.v4.1 annot-version=v4.1
MRPPMARGRGAGHGRGAFRAQNNAGRGGRGRGAFRAQNNAGRGLGVRGRGRGGGRGGANHRGGMRGGNKAVIIPHRHEGVFIAKSKDDALLTKSMVPGDT
NEDGTKVEYRVWNPFRSKLGAAIREGIDNIWIVPGARVLYLGAASGTSVSHVSDIVGPTGVVYAVEFSQRSGRDLVNMAKKRTNVMPIIEDARHPSKYRM
LVGMVDVIFSDVAQPDQARILALNAAYFLKTGGHFVLSIKANCIDSTMPAGKVYDGEVDRLRADLLKPAEMVTLDRFERDHACVVGSYRVPKKQKPSA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G52470 ATFIB1, ATFBR1,... SKP1/ASK1-INTERACTING PROTEIN,... Potri.008G192700
[exp]
0 1
AT1G58210 EMB1674 EMBRYO DEFECTIVE 1674, kinase ... Potri.007G124300
[exp]
13.92 0.8996
AT1G15240 Phox-associated domain;Phox-li... Potri.003G053200
[exp]
18.70 0.8487
AT1G22240 APUM8 pumilio 8 (.1) Potri.001G457700
[exp]
21.81 0.8810
AT1G74520 ATHVA22A HVA22 homologue A (.1) Potri.012G069300
[exp]
29.32 0.8052 ATHVA22.1
AT5G19280 FHA RAG1, KAPP ROOT ATTENUATED GROWTH 1, kina... Potri.008G149700
[exp]
35.74 0.7955
Potri.004G013800
[exp]
37.04 0.8762
AT3G11290 unknown protein Potri.001G256500
[exp]
44.45 0.8749
Potri.006G174801
[exp]
55.31 0.8711
AT5G42120 Concanavalin A-like lectin pro... Potri.005G189500
[exp]
68.96 0.8573
AT3G11310 unknown protein Potri.010G022201
[exp]
69.28 0.8651

Potri.008G192700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.