Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70140 498 / 4e-166 ATFH8 formin 8 (.1) AT1G59910 426 / 4e-136 Actin-binding FH2 (formin homology 2) family protein (.1) AT1G24150 401 / 6e-129 ATFH4, FH4 formin homologue 4 (.1) AT5G54650 281 / 3e-82 ATFH5, Fh5 FORMIN HOMOLOGY 5, formin homology5 (.1.2) AT5G67470 278 / 4e-81 ATFH6 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) AT3G05470 271 / 1e-78 Actin-binding FH2 (formin homology 2) family protein (.1) AT3G25500 267 / 3e-76 AHF1, AFH1, ATFH1 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) AT2G43800 257 / 2e-73 Actin-binding FH2 (formin homology 2) family protein (.1) AT4G15200 251 / 3e-72 AFH3 formin 3 (.1.2) AT5G48360 193 / 1e-51 Actin-binding FH2 (formin homology 2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G037900 [exp] 851 / 0 AT1G70140 488 / 4e-162 formin 8 (.1) Potri.015G069800 [exp] 479 / 5e-158 AT1G70140 484 / 3e-160 formin 8 (.1) Potri.007G054900 [exp] 299 / 2e-88 AT5G67470 684 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Potri.013G017900 [exp] 292 / 8e-86 AT3G05470 648 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.007G119900 [exp] 288 / 7e-85 AT5G54650 578 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.001G416100 [exp] 289 / 1e-84 AT5G54650 623 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.005G026300 [exp] 289 / 1e-84 AT3G05470 652 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.011G131700 [exp] 285 / 4e-83 AT5G54650 590 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.007G140200 [exp] 284 / 5e-83 AT3G25500 654 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029212 [exp] 507 / 2e-173 AT1G70140 491 / 6e-168 formin 8 (.1) Lus10010724 [exp] 438 / 4e-145 AT1G70140 442 / 2e-147 formin 8 (.1) Lus10042154 [exp] 370 / 4e-120 AT1G70140 377 / 1e-123 formin 8 (.1) Lus10004244 [exp] 370 / 1e-119 AT1G70140 396 / 6e-130 formin 8 (.1) Lus10004505 [exp] 305 / 1e-91 AT3G05470 628 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10019298 [exp] 287 / 6e-84 AT5G67470 826 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10025195 [exp] 286 / 1e-83 AT5G67470 642 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10031496 [exp] 283 / 1e-83 AT3G05470 608 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10011524 [exp] 285 / 5e-83 AT5G67470 818 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10015175 [exp] 282 / 5e-83 AT3G05470 635 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02181 [poplar] [flax] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Potri.008G192900.1 pacid=42807887 polypeptide=Potri.008G192900.1.p locus=Potri.008G192900 ID=Potri.008G192900.1.v4.1 annot-version=v4.1 ATGGCTGTCATTAAACAGCCATGGCATGTTCTCCAGCTAATGTTTTTCCTTTCAGTTATTCCTTTCTCTTCTTCCCAGTCAAATTCTCCTCAAAATATTG AAACCTTCTATCCATTTCCAGGACCAAAACCGACTGCTTCTCCGAACTCTACTTCATTGGGGTCATCAGTGCCAGCACGTTTGCCTCCGTCATCATCCAA CAGAAACGTTATTAAGGCAGTAGCTGCAACAGCTGTAAGCACTTTTGTTGTTGCCATTTTGCTCTTCTTCTTAATCCAGAGGTTCGTAATTGCTCCTCGA AGAAGAAAGGAAGGAGATGATGCTGATTCTGGAGGAGGCCAGACAGTGGCGCCTCTGCCCTCTCATGGTCAGTTTTCTCGAGTCGAAGGGAATGTGAAAG GAGTGGTTGTTGATGAGAATGGACTGGATGTTCTGTCCTGGAGAAAACATCAAGTGGAAGACAAGAAAAACAGTTCTCACAAACAAGAGCTCAGGAGGAA GTCTGAACCCACACAAGAAATTCCATTGATTCGAGGAAAACTCTCCACTTCTGAAAAGAAAGTTGTACCAGAAGCAACAGTTCCCACTGTCAGTTATCAA TCTATCGACGCTGGGACGGCTATCAATGCCTTTGAAAAACCAAAAACAAGCCAACCATCAAATCCTCCACTTACTCGGTCTCCAACACCGCCACCACAAT CTTCGATGGCAATTCCAAACAAGCAAGTTCCTGCACCGCCTCCACCTCCTACAAACCCAGCAAAGCAAAAACATCAACCACCCAAGGCGGCTGGTTTGGC GGCATCTTCAAATCTACCTCCATTTAATAAAGGTGAATCCGGGGGATCTTCAACCGGACAAGGCAGCACCAGTGCAGGAACAAGGAATGGTCAGGTAAAA GTGAAGCCGTTGCCCCGGGATAAGGTGAACAAGAATACTGGCCATTCCATGGCGTGGGACAAAATTGATGGTGGCTCTTTTAGGGTTGATGATGATCTTA TGGAAGCCCTCTTCGGATTCGTTGCCACCAACAGAAAATCCCCCAAAAGAGACAACTCGAGCAATTCAAAGAATCTTAGTTTCATCCCACCAGCACAAAT TTCTCTCCTTGATGCCAGAAAATCCCAGAACATGGCGATTGTTCTCAAATCTCTGTCAATCTCTCGCAATGAACTCCTGGGTGCATTAACTAATGGTCAT GGTCTAAATGCAGATACTCTTGAGAAGCTCATGAGAATTGACCCAACCAAAGAAGAAGAATCCCAAATCCTTGAATTCAGTGGGAATCCCACTAGACTGG CTGATGCTGAATCCTTCCTCTTCTATCTTCTGAAAGCTGTGCCATCGGCATTTGGTCGTCTTAGTGCCATGCTTTTCAGATCAAATTATGATGCAGAGAT TCTTCACTTCAAGGAATCTTTACAAATAGTTGATTCAGGGTGCACGGAGCTTCGAAATCGAGGGCTCTTTATCAAACTTCTGGAAGCAATTCTCAAGGCT GGTAATCGCATGAACTCGGGAATTTCTAGAGGAAACGCCCAAGCTTTCAAACCAACCTCACTTCGAGAGCTATCCGATGTTAAAAGCATCGATGGAAAAA CTACTTTACTTCACTTTGTCGTGGAAGAAGTAGTCCGATCTGAAGGAAAACGCTATGTTCTTAACCGAAATCGTAGCTTGAGTCGAAATAGCAGCCTACG AAGCAACAGCAGTAGTGTGATTTCAGAGAATTCAACGTCAAATGAAAAAAGAGAGAAGGAATATATGATGCTGGGATTACCTGCGGTAGGAGGGCTCAGT GCCGAATTCTCTAATGTAAAGAAAGCCGCCCTAATAGATTATGATGCCTTTGCTTCTACTTGCTCTGTTCTCGCAGCTCGTGCAAGAGAAGTTAGGGCAT TTGTGTCGCAATGTGCTGCTGCTAATGGCGAAGGGGGATTTGTAAAGGAAATGAAAGGTTTTCTTGAAGCAGCAGAGGAAGAACTGAAGAGTTTGACAAA AGAGCAGACTAGGGTGACGGAACTTGTTAAAAAAACAACAGAATATTACCATGCAGGAGCTTCCAAGGATCAAGAAGCACATGCACTTCAACTATTTGCC ATCATTAAAGACTTCCTATATATGGTTGACCAGGCATGTGTTGTGATTGCTCGAAATCTGCAGAGGAAAACGCCATCATCAAGTATTGAACACTCGCCTA AGTCACCAGCATCAAGAGTACCAGTAAGGTTCCCGAACTTGCCTGAACGCTTTATGCTCGAAAAATCTATGAGCAGCTCTAGTGAATCGGATTCAGATTT TTTAATAGATATTTATCAATTATCATGGAAGGGAGTGGACCAATGTATATAG
AA sequence Show only first row Show all	>Potri.008G192900.1 pacid=42807887 polypeptide=Potri.008G192900.1.p locus=Potri.008G192900 ID=Potri.008G192900.1.v4.1 annot-version=v4.1 MAVIKQPWHVLQLMFFLSVIPFSSSQSNSPQNIETFYPFPGPKPTASPNSTSLGSSVPARLPPSSSNRNVIKAVAATAVSTFVVAILLFFLIQRFVIAPR RRKEGDDADSGGGQTVAPLPSHGQFSRVEGNVKGVVVDENGLDVLSWRKHQVEDKKNSSHKQELRRKSEPTQEIPLIRGKLSTSEKKVVPEATVPTVSYQ SIDAGTAINAFEKPKTSQPSNPPLTRSPTPPPQSSMAIPNKQVPAPPPPPTNPAKQKHQPPKAAGLAASSNLPPFNKGESGGSSTGQGSTSAGTRNGQVK VKPLPRDKVNKNTGHSMAWDKIDGGSFRVDDDLMEALFGFVATNRKSPKRDNSSNSKNLSFIPPAQISLLDARKSQNMAIVLKSLSISRNELLGALTNGH GLNADTLEKLMRIDPTKEEESQILEFSGNPTRLADAESFLFYLLKAVPSAFGRLSAMLFRSNYDAEILHFKESLQIVDSGCTELRNRGLFIKLLEAILKA GNRMNSGISRGNAQAFKPTSLRELSDVKSIDGKTTLLHFVVEEVVRSEGKRYVLNRNRSLSRNSSLRSNSSSVISENSTSNEKREKEYMMLGLPAVGGLS AEFSNVKKAALIDYDAFASTCSVLAARAREVRAFVSQCAAANGEGGFVKEMKGFLEAAEEELKSLTKEQTRVTELVKKTTEYYHAGASKDQEAHALQLFA IIKDFLYMVDQACVVIARNLQRKTPSSSIEHSPKSPASRVPVRFPNLPERFMLEKSMSSSSESDSDFLIDIYQLSWKGVDQCI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G70140		ATFH8	formin 8 (.1)		Potri.008G192900 [exp]	0	1
AT2G23360			Plant protein of unknown funct...		Potri.007G046100 [exp]	1.00	0.9351
AT2G40470	AS2	ASL11, LBD15	ASYMMETRIC LEAVES2-LIKE 11, LO...		Potri.013G081200 [exp]	2.82	0.9119
AT5G43020			Leucine-rich repeat protein ki...		Potri.014G024400 [exp]	4.58	0.8634
AT1G52330			Late embryogenesis abundant (L...		Potri.003G055000 [exp]	4.89	0.8267
AT5G65170			VQ motif-containing protein (....		Potri.007G091600 [exp]	5.19	0.8537
AT1G22110			structural constituent of ribo...		Potri.002G092000 [exp]	5.29	0.8381
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Potri.001G150600 [exp]	5.38	0.8135
					Potri.005G162201 [exp]	5.47	0.8936
AT3G57620			glyoxal oxidase-related protei...		Potri.013G034900 [exp]	6.92	0.8426
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.007G050000 [exp]	7.21	0.8670

Compare expression of checked genes

Potri.008G192900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.