Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51980 593 / 0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) AT3G16480 564 / 0 MPPALPHA mitochondrial processing peptidase alpha subunit (.1) AT3G02090 190 / 6e-54 MPPBETA Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G036700 [exp] 882 / 0 AT1G51980 592 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Potri.001G191100 [exp] 632 / 0 AT1G51980 620 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Potri.004G118900 [exp] 192 / 1e-54 AT3G02090 822 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Potri.017G092400 [exp] 188 / 2e-53 AT3G02090 832 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035000 [exp] 736 / 0 AT1G51980 631 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10025839 [exp] 649 / 0 AT1G51980 643 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10038262 [exp] 642 / 0 AT1G51980 637 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10012926 [exp] 602 / 0 AT3G16480 504 / 3e-173 mitochondrial processing peptidase alpha subunit (.1) Lus10040886 [exp] 183 / 3e-51 AT3G02090 869 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10004939 [exp] 182 / 5e-51 AT3G02090 869 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10040885 [exp] 182 / 5e-51 AT3G02090 869 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10004938 [exp] 106 / 2e-25 AT3G02090 546 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10012918 [exp] 45 / 0.0002 AT5G56730 1501 / 0.0 Insulinase (Peptidase family M16) protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0094 [poplar] [flax] Peptidase_ME PF00675 [poplar] [flax] Peptidase_M16 Insulinase (Peptidase family M16) CL0094 [poplar] [flax] Peptidase_ME PF05193 [poplar] [flax] Peptidase_M16_C Peptidase M16 inactive domain
Representative CDS sequence Show only first row Show all	>Potri.008G193200.2 pacid=42808772 polypeptide=Potri.008G193200.2.p locus=Potri.008G193200 ID=Potri.008G193200.2.v4.1 annot-version=v4.1 ATGTACAGAACTGCAGTTTCGCGTCTCAGTGCTCTCAAGGGCGGCCGTAGATATCCTACAAGATTTGCAAGTTCGAGTGCTGCAGCAGCCTTGCAATCGT CCTCTTCCAGTGGTTTATTCAGCTGGCTTACTGGGGGAAAGTCCAAGTCTTTGTCACCTCTAGACTTTCCACTTCAAGGAGTTGAACTCCCTTCCACTTT GCCTGATTATGTTGAACCCGGGGTAACTAAGATTACAACACTTGGTAATGGCTTGCGAATTGCATCTGAAACATCACCGAGCCCTGTGGCGTCAATAGGG TTATATGTTGACTGTGGCTCAGTTTATGAGTCACCAGCAACATTTGGGGCTACTCACTTGCTGGAACGAATGGCATTCAAAAGCACAAGAAACCGCAGCC ACTTGCGAGTTGTACGAGAAGTGGAAGCAATTGGGGGCGCTGTGCAATCCTCAGCATCCCGGGAGCAGATGGGATACACATATGATGCTCTAAAGACTTA TCTTCCAGAGATGGTTGAGCTACTTATCGATTGTGTGAGGAACCCTGTCTTCCTTGATTGGGAGGTCAATGAACAGCTTCAGAAGGTGAAAGCTGAGATC AGTGAAGCTTCAAAGAACCCTCAAGGTGTGCTTTTAGAGGCGATTCACTCTGCTGGTTTTTCTGGTGGTTTGGCTAATCCACTTTTAGCCCCAGAATCTT CAATAGATAGATTGAATGGTTCACTCTTGGAGGAATTTGTAGTTGAAAATTATACTGCTCCTCGTATGGTGCTTGCAGCTTCTGGTGTTGAACATGAGGA ATTGGTAGCCATTGCAGAGCCCCTTTTATCTGACCTGCCTGATAAAAAGAGTCCTGGAGAGCCAGAATCTTTTTATACTGGAGGTGATTTTCGTTGCCAA GCTGATTCAGGGGACCCGAAAACCCATTTTGCTCTTGCATTTGGACTAAAAGGTGGCTGGCATGATGTGAAGGAGGCTATTACCTTGACAGTTCTTCAGG TTCTAATGGGAGGTGGTGGATCATTCTCAGCTGGTGGCCCTGGGAAAGGAATGTATTCAAGGTTATATCAACGTGTCTTGAATCGGTATCACAAAATTCA ATTGTTTTCGGCATTCAACAACATTTACAATCACACTGCCATATTTGGCATCGAAGCTACCACGGATGCAGATTTTGCATCATCAGCCATTGAGCTAGTG GTTAGAGAGCTAACTGAAGTTGCTTCGTCTGGTGCAGTTGACCCAGTGCAGCTACAACGTGCTAAACAGTCCACAAAGTCTGCCATTTTGATGAATCTGG AATCTAGAATGGTTGTTTCAGAAGATATAGGTAGACAAATATTGACATATAACAAGAGGAAACCTTTGGAGGATTTCTTGAAGGCTGTAGATGAGGTTAC ATCGCAGGATATTACCGAAATTTCCCAAAAGCTTGTTTCTTCTCCTCTCACAATGGCATCATATGGAGAAGTTATCAATGTCCCAACCTATGATGCAGTC AGCAGCATGTTCAAGTCAAAATGA
AA sequence Show only first row Show all	>Potri.008G193200.2 pacid=42808772 polypeptide=Potri.008G193200.2.p locus=Potri.008G193200 ID=Potri.008G193200.2.v4.1 annot-version=v4.1 MYRTAVSRLSALKGGRRYPTRFASSSAAAALQSSSSSGLFSWLTGGKSKSLSPLDFPLQGVELPSTLPDYVEPGVTKITTLGNGLRIASETSPSPVASIG LYVDCGSVYESPATFGATHLLERMAFKSTRNRSHLRVVREVEAIGGAVQSSASREQMGYTYDALKTYLPEMVELLIDCVRNPVFLDWEVNEQLQKVKAEI SEASKNPQGVLLEAIHSAGFSGGLANPLLAPESSIDRLNGSLLEEFVVENYTAPRMVLAASGVEHEELVAIAEPLLSDLPDKKSPGEPESFYTGGDFRCQ ADSGDPKTHFALAFGLKGGWHDVKEAITLTVLQVLMGGGGSFSAGGPGKGMYSRLYQRVLNRYHKIQLFSAFNNIYNHTAIFGIEATTDADFASSAIELV VRELTEVASSGAVDPVQLQRAKQSTKSAILMNLESRMVVSEDIGRQILTYNKRKPLEDFLKAVDEVTSQDITEISQKLVSSPLTMASYGEVINVPTYDAV SSMFKSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G51980			Insulinase (Peptidase family M...		Potri.008G193200 [exp]	0	1
AT3G05940			Protein of unknown function (D...		Potri.005G000600 [exp]	1.00	0.8834
AT2G27730			copper ion binding (.1)		Potri.004G201700 [exp]	2.82	0.8261
AT1G01910			P-loop containing nucleoside t...		Potri.002G152500 [exp]	4.58	0.8114
AT5G59210			myosin heavy chain-related (.1...		Potri.001G245500 [exp]	5.29	0.7495
AT2G18390		HAL, ARL2, TTN5...	TITAN 5, HALLIMASCH, ARF-LIKE ...		Potri.007G024800 [exp]	8.12	0.7439	Pt-TTN5.1
AT2G01930	BBR_BPC	BPC1, BBR/BPC1,...	basic pentacysteine1 (.1.2)		Potri.008G140200 [exp]	12.00	0.7946
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Potri.001G280600 [exp]	12.88	0.6662	Pt-ATUBA1.5
AT1G28410			unknown protein		Potri.004G048500 [exp]	13.07	0.7677
AT2G30395	OFP	ATOFP17, OFP17	ovate family protein 17 (.1)		Potri.019G128400 [exp]	14.42	0.7789
AT3G53760		ATGCP4	GAMMA-TUBULIN COMPLEX PROTEIN ...		Potri.014G128400 [exp]	14.73	0.7451

Compare expression of checked genes

Potri.008G193200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.