Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70180 121 / 6e-31 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) AT5G48680 70 / 7e-14 Sterile alpha motif (SAM) domain-containing protein (.1) AT3G07170 69 / 1e-13 Sterile alpha motif (SAM) domain-containing protein (.1) AT2G45700 48 / 6e-06 sterile alpha motif (SAM) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G036500 [exp] 537 / 0 AT1G70180 134 / 1e-35 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) Potri.002G244700 [exp] 87 / 6e-20 AT3G07170 213 / 1e-70 Sterile alpha motif (SAM) domain-containing protein (.1) Potri.014G190800 [exp] 78 / 8e-17 AT3G07170 218 / 1e-72 Sterile alpha motif (SAM) domain-containing protein (.1) Potri.012G104700 [exp] 44 / 7e-05 AT3G48800 166 / 2e-49 Sterile alpha motif (SAM) domain-containing protein (.1) Potri.015G104000 [exp] 44 / 0.0001 AT3G48800 115 / 5e-30 Sterile alpha motif (SAM) domain-containing protein (.1) Potri.006G218300 [exp] 42 / 0.0006 AT2G45700 732 / 0.0 sterile alpha motif (SAM) domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030661 [exp] 320 / 5e-108 AT1G70180 102 / 6e-24 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) Lus10030825 [exp] 316 / 7e-107 AT1G70180 104 / 8e-25 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) Lus10014516 [exp] 128 / 4e-34 AT1G70180 80 / 1e-16 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) Lus10022780 [exp] 77 / 2e-16 AT3G07170 219 / 5e-73 Sterile alpha motif (SAM) domain-containing protein (.1) Lus10038185 [exp] 75 / 2e-15 AT3G07170 234 / 9e-79 Sterile alpha motif (SAM) domain-containing protein (.1) Lus10011841 [exp] 60 / 1e-09 AT3G07170 196 / 9e-61 Sterile alpha motif (SAM) domain-containing protein (.1) Lus10038078 [exp] 46 / 3e-05 AT2G45700 767 / 0.0 sterile alpha motif (SAM) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0003 [poplar] [flax] SAM PF00536 [poplar] [flax] SAM_1 SAM domain (Sterile alpha motif)
Representative CDS sequence Show only first row Show all	>Potri.008G193300.2 pacid=42808410 polypeptide=Potri.008G193300.2.p locus=Potri.008G193300 ID=Potri.008G193300.2.v4.1 annot-version=v4.1 ATGTCAGAAACTTCCAAAGCTCGCGTCACTATTACACTTGGGCGCGGTGGTCAGGTGGTGAAGAGAGCTGCAACGGTATCGGATGATTATTCTAATTCTC AGCAAGGTGCTGGGAGTAAGCGGTCTGTTATGGAAAGATTAGGAAGTAATTCAGACATTTTGTCATTGCATGGAAACCAACTTAGCAACAAACGGCAAAG AGGGGACAACAGGTTGACAAGTATAGGTGCTAATGGTGTGGAAGATGCTCGCATTGGTAAAGATGACCTACGTTACAAACTCATGCAAAAAAATGTATTT AGTAGAACTCAAAGTGACGATGACCAGAAAACCATGGACCTTCGTGAAAAGCTTTCTAGGACAGTCCGGTCTTCAGGCCCTCTGCTCAGTAATCTTGATG CACGGCACCGCCTGCCTGACCCAAAGGACACTAGCATCTTAGGGAGAATTCCTCCCACAAGAAGTGCAGATGTTTTACACCACATGGATTCTTCCAGAAA TTCCTTTTCTCCTTGGACTTTGGATCATATAAGACGAAGATCTCCAGATAGAGTTATGAGTTCTTCCGGGGGTTTATCGCCACCCAGAAACATGGATAAT CTACAGCGAAGGCCTTTGAACAGGACATATGATGCTGTTAGAACAGTTCCATATATGAATAAAGATGTTCTTGATACACCGAGGTCAGTGAGTAGCTCCA CTACTTTCATTACAAAATCTGCCATGCTGCCTCTATCGCCATCACCAACAGTGCCTGCAAAGTCTGTGGTACCGCTCATGGGCCATCTTCCTCCAAGTGG CATTGTGCAGAAGAGTTCATATGTGGCAGAAGAACAACAAACTGTTGAAGGCTTACTGCATTCATTGGGATTAGGGAAATACGTTGTTCTTTTCAAGGCT GAGGAAATAGATATGACTGCATTGAAGCAGATGGGGGAAAGGGACCTTAAAGAGCTGGGGATACCTATGGGGCCAAGAAAGAAGATTCTTCTTGCACTCC TACCTCGTTCTAAAAGGCAACCTTGA
AA sequence Show only first row Show all	>Potri.008G193300.2 pacid=42808410 polypeptide=Potri.008G193300.2.p locus=Potri.008G193300 ID=Potri.008G193300.2.v4.1 annot-version=v4.1 MSETSKARVTITLGRGGQVVKRAATVSDDYSNSQQGAGSKRSVMERLGSNSDILSLHGNQLSNKRQRGDNRLTSIGANGVEDARIGKDDLRYKLMQKNVF SRTQSDDDQKTMDLREKLSRTVRSSGPLLSNLDARHRLPDPKDTSILGRIPPTRSADVLHHMDSSRNSFSPWTLDHIRRRSPDRVMSSSGGLSPPRNMDN LQRRPLNRTYDAVRTVPYMNKDVLDTPRSVSSSTTFITKSAMLPLSPSPTVPAKSVVPLMGHLPPSGIVQKSSYVAEEQQTVEGLLHSLGLGKYVVLFKA EEIDMTALKQMGERDLKELGIPMGPRKKILLALLPRSKRQP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G70180			Sterile alpha motif (SAM) doma...		Potri.008G193300 [exp]	0	1
AT1G20220			Alba DNA/RNA-binding protein (...		Potri.002G066100 [exp]	2.23	0.7989
AT3G15460			Ribosomal RNA processing Brix ...		Potri.001G403100 [exp]	9.94	0.7335
AT1G52980		AtNug2	nuclear/nucleolar GTPase 2, GT...		Potri.001G402500 [exp]	10.67	0.7438
AT2G47790			Transducin/WD40 repeat-like su...		Potri.002G205600 [exp]	12.72	0.7487
AT5G64830			programmed cell death 2 C-term...		Potri.007G080500 [exp]	20.83	0.7286
AT2G28600			P-loop containing nucleoside t...		Potri.010G234000 [exp]	28.61	0.7292
AT5G37850		SOS4, ATSOS4	SALT OVERLY SENSITIVE 4, pfkB-...		Potri.017G129000 [exp]	29.83	0.6671
AT2G27490		ATCOAE	dephospho-CoA kinase family (....		Potri.010G206900 [exp]	31.78	0.7332
AT5G06360			Ribosomal protein S8e family p...		Potri.006G203400 [exp]	35.32	0.7108
AT1G03330			Small nuclear ribonucleoprotei...		Potri.004G219000 [exp]	36.98	0.7197

Compare expression of checked genes

Potri.008G193300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.