Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ARL1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24120 568 / 0 ARL1 ARG1-like 1 (.1) AT1G59980 468 / 2e-164 GPS4, ARL2 ,ATDJC39 gravity persistence signal 4, ARG1-like 2 (.1) AT1G68370 467 / 2e-164 ARG1 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) AT3G17830 75 / 2e-14 Molecular chaperone Hsp40/DnaJ family protein (.1) AT3G08910 74 / 2e-14 DNAJ heat shock family protein (.1) AT2G20560 74 / 3e-14 DNAJ heat shock family protein (.1) AT5G01390 72 / 3e-14 DNAJ heat shock family protein (.1.2.3.4) AT5G48030 74 / 5e-14 GFA2 gametophytic factor 2 (.1) AT4G28480 72 / 5e-14 DNAJ heat shock family protein (.1.2) AT4G39960 73 / 6e-14 Molecular chaperone Hsp40/DnaJ family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G036200 [exp] 707 / 0 AT1G24120 566 / 0.0 ARG1-like 1 (.1) Potri.008G123200 [exp] 462 / 3e-162 AT1G68370 670 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Potri.010G122300 [exp] 456 / 6e-160 AT1G68370 671 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Potri.002G198000 [exp] 76 / 5e-15 AT3G62600 551 / 0.0 DNAJ heat shock family protein (.1) Potri.014G122600 [exp] 76 / 8e-15 AT3G62600 565 / 0.0 DNAJ heat shock family protein (.1) Potri.006G246700 [exp] 75 / 8e-15 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1) Potri.018G034600 [exp] 75 / 9e-15 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.019G041400 [exp] 71 / 1e-14 AT5G16650 193 / 5e-65 Chaperone DnaJ-domain superfamily protein (.1) Potri.009G065500 [exp] 74 / 4e-14 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029202 [exp] 610 / 0 AT1G24120 616 / 0.0 ARG1-like 1 (.1) Lus10010717 [exp] 586 / 0 AT1G24120 590 / 0.0 ARG1-like 1 (.1) Lus10030660 [exp] 567 / 0 AT1G24120 588 / 0.0 ARG1-like 1 (.1) Lus10030827 [exp] 534 / 0 AT1G24120 545 / 0.0 ARG1-like 1 (.1) Lus10005113 [exp] 466 / 1e-163 AT1G68370 688 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Lus10034344 [exp] 409 / 5e-141 AT1G68370 624 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Lus10014584 [exp] 77 / 4e-15 AT3G62600 521 / 0.0 DNAJ heat shock family protein (.1) Lus10032100 [exp] 77 / 4e-15 AT3G62600 526 / 0.0 DNAJ heat shock family protein (.1) Lus10022297 [exp] 76 / 5e-15 AT3G62600 522 / 0.0 DNAJ heat shock family protein (.1) Lus10013981 [exp] 75 / 1e-14 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Potri.008G193500.1 pacid=42806635 polypeptide=Potri.008G193500.1.p locus=Potri.008G193500 ID=Potri.008G193500.1.v4.1 annot-version=v4.1 ATGCCGTCTCATCTATCGAAGCAGGATGCAACAGCAGGGCCGGTGCGGCGGGACCCGTATGAAGTCCTTGCCATCTCCAGGAACTCCACTGACCAGGAAA TTAAGTCCGCCTACCGTAAAATGGCTCTCAAGTACCATCCTGACAAAAATTCAAATGACCCTGAAGCAGCTGATATGTTTAAAGAGGTTACATTTTCATA TAATATATTGTCTGATCCAGACAAGCGGCGCCAATATGATTCAGCTGGTTTTGAGGCTGTTGAATTGGAAAGTCAAGAACTTGAACTAGATCTTTCAAGC TTGGGAGCTGTAAATACTATGTTTGCGGCACTCTTTAGTAAACTTGGAGTACCGATTAAGACCACTGTATCAGCAACTGTCTTGGAGGAGGCGCTTAATG GTGTTGTTGATATTCATCCACTTCCACTTGGGTTGCCTATTTGTCGGAAGGTTGAAAAGCAATGTGCCCACTTCTATTCTGTCACGATAACAGAAGAGGA GGCAAGGGATGGATTTGTCTGCCGAGTCCAATCATCTGACAAAAGCAAGTTCAAGTTGTTGTATTTTGATCAGGAAGAAAGTGGTGGATTAAGCCTTGCT CTACAGGAGGACAGTGCTAAAACAGGAAAGGTTACATCTGCTGGAATGTACTTTCTTTGTTTTCCTGTATACCGGCTGGATCACACTGTCAACTCTATTG CAGCTGCAAAAGATGCTGATGCTGCCTTCTTCAAAATACTGGATGGGTTTCAGCCATATGAAATAACTGAACTGAAGGCTGGCACCCATGTTTTTGCTGT CTATGGTGACAATTTTTTTAAAAGCGCAAGTTACTCAATAGAAGCTCTCTGTGCTGCACCTTTTATGGAAGAGAAGGCAAATCTTAGAGCTGTAGAAGCA GAGATTCTTGCAAAGAGGGCAGAAATATCTAAGTTTGAGACTGAATATAGAGAGGTATTGGCACAATTTACCGAGATGAGCAGTAGATATGCACAAGAGA TGCAAGCAATTGATGAGTTCCTTAGACAAAGGAATGAAATTCATGCCTCCTACACCACTGCTCCGCCAATGAAGCGGAGTTCAAATAAACGGAGGAATAA GGGTTCCATCAGGGAGACCAAAGAAGATGCACAAGTAAGAGATAAGAAACCTTCTACAAGGGATAGACCTAAGAAGAAGAAATGGTTCAACATCCACTTA AAAGTTGACAAAAGAAAGCCTTGCTAA
AA sequence Show only first row Show all	>Potri.008G193500.1 pacid=42806635 polypeptide=Potri.008G193500.1.p locus=Potri.008G193500 ID=Potri.008G193500.1.v4.1 annot-version=v4.1 MPSHLSKQDATAGPVRRDPYEVLAISRNSTDQEIKSAYRKMALKYHPDKNSNDPEAADMFKEVTFSYNILSDPDKRRQYDSAGFEAVELESQELELDLSS LGAVNTMFAALFSKLGVPIKTTVSATVLEEALNGVVDIHPLPLGLPICRKVEKQCAHFYSVTITEEEARDGFVCRVQSSDKSKFKLLYFDQEESGGLSLA LQEDSAKTGKVTSAGMYFLCFPVYRLDHTVNSIAAAKDADAAFFKILDGFQPYEITELKAGTHVFAVYGDNFFKSASYSIEALCAAPFMEEKANLRAVEA EILAKRAEISKFETEYREVLAQFTEMSSRYAQEMQAIDEFLRQRNEIHASYTTAPPMKRSSNKRRNKGSIRETKEDAQVRDKKPSTRDRPKKKKWFNIHL KVDKRKPC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G24120		ARL1	ARG1-like 1 (.1)		Potri.008G193500 [exp]	0	1	ARL1.3
AT1G75010		ARC3	ACCUMULATION AND REPLICATION O...		Potri.008G142301 [exp]	1.00	0.8082
AT3G29390		RIK	RS2-interacting KH protein (.1...		Potri.017G093600 [exp]	3.74	0.7834
AT4G37740	GRF	ATGRF2	growth-regulating factor 2 (.1...		Potri.003G100800 [exp]	4.00	0.7597
AT3G13170		ATSPO11-1	Spo11/DNA topoisomerase VI, su...		Potri.001G366700 [exp]	5.65	0.7376
AT4G35740		ATRECQ3, RECQL3	A. THALIANA RECQ HELICASE 3, D...		Potri.005G107400 [exp]	5.74	0.7633
AT1G79030			Chaperone DnaJ-domain superfam...		Potri.011G142000 [exp]	10.39	0.7286
AT5G60690	HD	IFL1, REV	REVOLUTA, INTERFASCICULAR FIBE...		Potri.004G211300 [exp]	10.48	0.7305	Pt-HB1.7
AT5G08391			Protein of unknown function (D...		Potri.001G329000 [exp]	11.48	0.6905
AT3G09320			DHHC-type zinc finger family p...		Potri.016G100200 [exp]	15.42	0.7450
AT3G61960			Protein kinase superfamily pro...		Potri.014G107000 [exp]	15.49	0.6840

Compare expression of checked genes

Potri.008G193500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.