Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10510 813 / 0 EMB2004 embryo defective 2004, RNI-like superfamily protein (.1) AT3G63130 102 / 1e-22 ATRANGAP1, RANGAP1 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) AT5G19320 89 / 2e-18 RANGAP2 RAN GTPase activating protein 2 (.1) AT5G55540 72 / 6e-13 LOP1, TRN1 LOPPED 1, tornado 1 (.1) AT3G06000 44 / 8e-05 RNI-like superfamily protein (.1) AT4G15475 44 / 0.0003 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G052900 [exp] 101 / 2e-22 AT3G63130 664 / 0.0 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) Potri.005G209600 [exp] 100 / 5e-22 AT3G63130 667 / 0.0 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) Potri.010G091100 [exp] 89 / 2e-18 AT5G19320 646 / 0.0 RAN GTPase activating protein 2 (.1) Potri.001G361200 [exp] 52 / 2e-06 AT5G55540 1900 / 0.0 LOPPED 1, tornado 1 (.1) Potri.006G195800 [exp] 44 / 0.0003 AT3G58530 477 / 9e-170 RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030658 [exp] 783 / 0 AT1G10510 759 / 0.0 embryo defective 2004, RNI-like superfamily protein (.1) Lus10030829 [exp] 777 / 0 AT1G10510 747 / 0.0 embryo defective 2004, RNI-like superfamily protein (.1) Lus10006930 [exp] 98 / 3e-21 AT3G63130 712 / 0.0 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) Lus10014670 [exp] 92 / 2e-19 AT3G63130 717 / 0.0 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) Lus10034066 [exp] 89 / 3e-18 AT5G19320 669 / 0.0 RAN GTPase activating protein 2 (.1) Lus10010523 [exp] 88 / 4e-18 AT5G19320 666 / 0.0 RAN GTPase activating protein 2 (.1) Lus10016591 [exp] 53 / 8e-07 AT5G55540 1027 / 0.0 LOPPED 1, tornado 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF13516 [poplar] [flax] LRR_6 Leucine Rich repeat
Representative CDS sequence Show only first row Show all	>Potri.008G193700.2 pacid=42806755 polypeptide=Potri.008G193700.2.p locus=Potri.008G193700 ID=Potri.008G193700.2.v4.1 annot-version=v4.1 ATGGGCTTCACTTCGGCTCTCTCTCTATACTCCCTCTCACATCCGAAGGTTTCAGCTGGGGCGGCCCATTCTCATTCTCATCCGCTAAAGCACAGACTCC AATCCGAGGCGAACCCTTTAACGGTTCGAAGAAGATGTTTGAGATTTAGGAGTGTGGTTGTGAAGGCGGCTGCTGCTTCTGGACGTGGCCGCAGAGTGTA CAGTCAGTCTCAGCCTCCTTTGATTAACGCTCCCGTCAAGCAGGTTGCCTCCTTCATTATCCCCGCCGGAGTCTTTGTAGCTGTCACTTTCGTTTTGTGG AAATTGGTGGAGAAACTTCTTATGCCGAAGCCAGCAAGGTCTAGTTTATCAGCAGCAGAAAATAAGTCTCCTGAAAAAGGAATGAAATGGTCCTTTGCCC CTGGCACTAATTTACTATCAGGTTTCACTGCCAAAGTCGACAGGGAGTCCAAGCAGAAGCTTAATGAATTTGCCAAGCAACTCAGGGCTTTCAGAAGCGT TGACATGTCCGGATGTAATTTCGGAGATGAAGGACTGTTTTTCCTTGCTGAGAGCTTAGCATACAACCAGATTCTAGAGGAAGTGAGTTTTGCTGCAAAT GGAATAACTGCAGAAGGAACAAAAGCCTTTGACCGTGTACTTCAATCAAACATTTCTCTAAAAACTCTCAACATTTCTGGAAATCCTATTGGTGATGAAG GAGCCAAGATCCTGTGTGAGATATTGGTGGATAATGTTGGTATTGAAAAGCTCCAGCTGAACAGTGCTGATTTAGGTGATGAGGGTGCAAAGGCTATTGC TGACTTATTGAAGAAAAGTTCAACCTTGCGTGTGGTTGAACTTAATAACAACATGATTGACTATTCTGGATTTACAAGTCTTGCTGGAGCACTTCTTGAG AATAATGCTGTACGAAGTATATATCTCAATGGAAATTATGGTGGCGCTTTGGGGGCTAATGCTTTGGCTAAAGGGCTTGAGGGGAACAAGTCTTTACGAG AACTTCACTTGCAAGGAAATTCTATTGGAGATGAAGGAGTTCGTGCCTTGATGTCAGGTTTATCTTCAACCAAAGCAAAACTTACGCATCTAGACATTGG CAACAACTCAATTAGTGCAAAAGGTGCCTTTCATGTTGCCGAGTATGTCAAAAAGAGCAAGAGCTTATTTTGGTTGAACATGTACATGAATGACATAGGT GATGAGGGTGCTGAAAAGATTGCTGATGCTTTGAAGCAAAACCGTAGTATAGCAATTATAGACCTGGGAGGAAATAACATACACGCCAAGGGAATAAGTG AAATAGCTCAAGTTTTAAAAGATAACACTGTCATCACAACGTTGGAAATCGGTTATAATCCCTTCGGACCAGATGGAATGAAGGTGTTATCAGAAATTCT TAAGTTTCATGGAAATGTGAAAGCACTAAAGCTGGGTTGGTGCCAGATAGGAGCAAAGGGCTCAGAGTACATTGCAGATACTTTGAAATACAACAATACA ATTTCGATTCTGGACTTGCGAGGAAATGGGCTCAGAGATGAAGGTGCGGTTTGTCTGGCTCGCAGCTTGAAAGTTGTCAATGAAGTTCTAACCGAGCTTG ACTTAGGATTTAATGAAATAAGAGATGATGGGGCTTTTGCCATTGCTCAAGCCCTCAAGTCAAATGAAGATGTAAAAATCACCTCTCTAAATCTCGGAAA TAACTTCCTTACAAAATTTGGGCAGAGTGCTCTCACTGATGCAAGGGATCATGTATATGAGATGAATGAAAAGGAAGTGAACATCGTTTTCTAG
AA sequence Show only first row Show all	>Potri.008G193700.2 pacid=42806755 polypeptide=Potri.008G193700.2.p locus=Potri.008G193700 ID=Potri.008G193700.2.v4.1 annot-version=v4.1 MGFTSALSLYSLSHPKVSAGAAHSHSHPLKHRLQSEANPLTVRRRCLRFRSVVVKAAAASGRGRRVYSQSQPPLINAPVKQVASFIIPAGVFVAVTFVLW KLVEKLLMPKPARSSLSAAENKSPEKGMKWSFAPGTNLLSGFTAKVDRESKQKLNEFAKQLRAFRSVDMSGCNFGDEGLFFLAESLAYNQILEEVSFAAN GITAEGTKAFDRVLQSNISLKTLNISGNPIGDEGAKILCEILVDNVGIEKLQLNSADLGDEGAKAIADLLKKSSTLRVVELNNNMIDYSGFTSLAGALLE NNAVRSIYLNGNYGGALGANALAKGLEGNKSLRELHLQGNSIGDEGVRALMSGLSSTKAKLTHLDIGNNSISAKGAFHVAEYVKKSKSLFWLNMYMNDIG DEGAEKIADALKQNRSIAIIDLGGNNIHAKGISEIAQVLKDNTVITTLEIGYNPFGPDGMKVLSEILKFHGNVKALKLGWCQIGAKGSEYIADTLKYNNT ISILDLRGNGLRDEGAVCLARSLKVVNEVLTELDLGFNEIRDDGAFAIAQALKSNEDVKITSLNLGNNFLTKFGQSALTDARDHVYEMNEKEVNIVF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10510		EMB2004	embryo defective 2004, RNI-lik...		Potri.008G193700 [exp]	0	1
AT3G33520		SUF3, ESD1, ATA...	SUPPRESSOR OF FRI 3, EARLY IN ...		Potri.018G128300 [exp]	1.00	0.8962	ARP6.1,ARP906
AT2G25970			KH domain-containing protein (...		Potri.006G231800 [exp]	1.73	0.8474
AT4G31210			DNA topoisomerase, type IA, co...		Potri.006G279700 [exp]	6.32	0.8578
AT4G10070			KH domain-containing protein (...		Potri.019G072500 [exp]	8.66	0.8387
AT5G48030		GFA2	gametophytic factor 2 (.1)		Potri.009G065500 [exp]	8.94	0.8273	GFA2.1
AT3G24560		RSY3	RASPBERRY 3, Adenine nucleotid...		Potri.018G081500 [exp]	11.22	0.8048
AT1G02060			Tetratricopeptide repeat (TPR)...		Potri.014G056400 [exp]	13.00	0.8130
AT2G31530		EMB2289, SCY2	SECY HOMOLOG 2, EMBRYO DEFECTI...		Potri.002G053900 [exp]	17.66	0.8402
AT2G34040			Apoptosis inhibitory protein 5...		Potri.011G062500 [exp]	18.54	0.7641
					Potri.004G206650 [exp]	20.97	0.8044

Compare expression of checked genes

Potri.008G193700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.