Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59990 632 / 0 RH22, EMB3108 RNA helicase 22, EMBRYO DEFECTIVE 3108, DEA(D/H)-box RNA helicase family protein (.1) AT4G34910 97 / 6e-21 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G09730 97 / 7e-21 RH39 RH39 (.1) AT2G40700 92 / 3e-19 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G00660 91 / 3e-19 ATRH8 RNAhelicase-like 8 (.1.2) AT2G45810 89 / 2e-18 DEA(D/H)-box RNA helicase family protein (.1) AT5G63630 89 / 4e-18 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G60990 87 / 5e-18 DEA(D/H)-box RNA helicase family protein (.1) AT3G61240 87 / 7e-18 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT5G08610 88 / 9e-18 PDE340 PIGMENT DEFECTIVE 340, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G198300 [exp] 97 / 8e-21 AT4G09730 743 / 0.0 RH39 (.1) Potri.012G045800 [exp] 92 / 3e-19 AT2G33730 994 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G157500 [exp] 90 / 1e-18 AT4G00660 817 / 0.0 RNAhelicase-like 8 (.1.2) Potri.014G081100 [exp] 89 / 1e-18 AT4G00660 822 / 0.0 RNAhelicase-like 8 (.1.2) Potri.006G196000 [exp] 87 / 7e-18 AT3G58570 790 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G083000 [exp] 87 / 7e-18 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G045300 [exp] 87 / 1e-17 AT3G18600 747 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G061900 [exp] 86 / 2e-17 AT2G42520 786 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G249100 [exp] 86 / 2e-17 AT5G60990 619 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029196 [exp] 697 / 0 AT1G59990 671 / 0.0 RNA helicase 22, EMBRYO DEFECTIVE 3108, DEA(D/H)-box RNA helicase family protein (.1) Lus10010711 [exp] 696 / 0 AT1G59990 657 / 0.0 RNA helicase 22, EMBRYO DEFECTIVE 3108, DEA(D/H)-box RNA helicase family protein (.1) Lus10027240 [exp] 94 / 1e-19 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017804 [exp] 93 / 1e-19 AT4G00660 854 / 0.0 RNAhelicase-like 8 (.1.2) Lus10009616 [exp] 92 / 3e-19 AT3G18600 721 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038950 [exp] 91 / 5e-19 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10014783 [exp] 89 / 1e-18 AT4G00660 853 / 0.0 RNAhelicase-like 8 (.1.2) Lus10008989 [exp] 89 / 1e-18 AT3G18600 508 / 2e-177 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038771 [exp] 90 / 2e-18 AT3G06980 645 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10037646 [exp] 89 / 2e-18 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.008G193800.1 pacid=42808023 polypeptide=Potri.008G193800.1.p locus=Potri.008G193800 ID=Potri.008G193800.1.v4.1 annot-version=v4.1 ATGCTTCATCATCGCTCTCCTGCTTCAATGCTCCATTCCTCGTATAAAATACTTGCTCCATCATCACTTCCTCCACGACAACCTAAACCCCTTTCCCAAT TAAAGCCCTCCTTTTCATTTCTATCCTCTCCGCTTCGAATCCGCTTGTTTTTCCTCAACCCAAGAGCAATTCGAGGATTCGCCACTGCTGTTGTCGCCGA GACTAAGGCAGCCGAGACTAAGACAGCCGAGACCTTCTTTTCCGACCACGCTGTTTCCTGGGCTTCTCTTGGTTTGTCTCATCCGCTCTCTCGAGCTCTC TCCAATACTGGCTTTTCAAGACCCTCTCTTGTTCAGGCTGCGGCTATACCATCAATACTTTCGGGAAAGGATGTGGTTATTGCAGCGGAGACTGGTAGTG GTAAAACACATTCCTACTTAGTTCCTCTAATTAACAACAGGCTATCTGCTTCTGCTTCTCAACAAGGATTGACTCCAACCCCATCTGGGCTTTCTCTTGT TCTTTGCCCCAATGTGTTGCTATGTGACCAAGTTGTCAGGATGGCTAGTGGTCTTTGTGATGATGATGGCCACCCACTTCTTAAAGTTGCAGCTGTCTGT GGCCGACAGGGCTGGCCAGTCAATCAGCCGGATATTATTGTATCAACACCAGCTGCCCTTCTGAATAATATTGATCCGAAAAAACAATCCCGGTCCAGTT TTATTCGTGGTGTAAAATATGTGGTGTTTGATGAAGCAGACATGCTTCTCTGTGGGGGATTTCAGAATCAAGTTATCCGTCTCATAAACATGCTTCGTTT TGATGAGAAGCAGCTGTCCCGTGCAAATAAATCTGCAGTCGAGGTTCCTCAGGGAATAGGTTCTGATTCTCTAGAGCGTTTCAGCTCAGAGGATGTAGAA GACCAACAAGAATCAGTCTTGGAAGAGGATGAAGAAGACCAACAAGAATCAGTCTTGGAAGAGGATGAGGATTTTGTTGCTGAGTTTGAAGTTGAGGACA TAAAAGAGGAAATTGAGGCTGGGTCCATTGACAGAAAAGACTGGAGGAGGGTGAGAAAAAATTACGAACGCAGTAAGCAGTACATTTTTGTCGCAGCCAC CCTACCAGTCAATGGAAAAAAAACTGCTGGAGCCATGCTGAAGCGAATGTTTCCAGATGCAAATTGGATTAGTGGAACCTATCTTCATTGTCACAACCCT AGATTGGAGCGAAAGTGGGTTGAAGTTACAGTTGATACCCAGTTGCATGCACTCATTGAGGCTGTGAAACAAGGATTTAGATCTGACATGTTAGATTATG GGGCTGGTGTGAGTAGAACTATGGTTTTTGCAAACACTGTTGAGGCTGTTGAAGCAGTGGCTAAGATATTGGGTAAAGCAGGAATTGAGTGTTTTCGTTA CCATAAAGACAGCTCTTTGGAGGAACGTGCTAAGACATTGGTTGATTTCCGAGAAAAAGGTGGAGTTTTTGTGTGCACTGATGCTGCTGCACGTGGAGTT GACATTCCGGATGTCTCACATGTTATTCAGGCGGACTTTGCCACCTCTGCTGTAGATTTCTTGCATAGAGTTGGTCGCACAGCCCGGGCTGGTCATCATG GACTTGTCACTAGCCTGTATACTGAATCCAACCGGGATCTTGTTGATGCTATTCGTCAAGCAGAGAAACTGGGTCAGCCTGTGGAGACTGCTTTTAGCCG GAAAAGGAGCTTCAGGAACAAACTTAAGAAGAGAGCAGGTTTTAGCAAATTGATAGACAAATCGACTGTTGCATTGACGAGTGCTTAA
AA sequence Show only first row Show all	>Potri.008G193800.1 pacid=42808023 polypeptide=Potri.008G193800.1.p locus=Potri.008G193800 ID=Potri.008G193800.1.v4.1 annot-version=v4.1 MLHHRSPASMLHSSYKILAPSSLPPRQPKPLSQLKPSFSFLSSPLRIRLFFLNPRAIRGFATAVVAETKAAETKTAETFFSDHAVSWASLGLSHPLSRAL SNTGFSRPSLVQAAAIPSILSGKDVVIAAETGSGKTHSYLVPLINNRLSASASQQGLTPTPSGLSLVLCPNVLLCDQVVRMASGLCDDDGHPLLKVAAVC GRQGWPVNQPDIIVSTPAALLNNIDPKKQSRSSFIRGVKYVVFDEADMLLCGGFQNQVIRLINMLRFDEKQLSRANKSAVEVPQGIGSDSLERFSSEDVE DQQESVLEEDEEDQQESVLEEDEDFVAEFEVEDIKEEIEAGSIDRKDWRRVRKNYERSKQYIFVAATLPVNGKKTAGAMLKRMFPDANWISGTYLHCHNP RLERKWVEVTVDTQLHALIEAVKQGFRSDMLDYGAGVSRTMVFANTVEAVEAVAKILGKAGIECFRYHKDSSLEERAKTLVDFREKGGVFVCTDAAARGV DIPDVSHVIQADFATSAVDFLHRVGRTARAGHHGLVTSLYTESNRDLVDAIRQAEKLGQPVETAFSRKRSFRNKLKKRAGFSKLIDKSTVALTSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G59990		RH22, EMB3108	RNA helicase 22, EMBRYO DEFECT...		Potri.008G193800 [exp]	0	1
AT1G32580			plastid developmental protein ...		Potri.008G169900 [exp]	1.00	0.9703
AT5G17660			tRNA (guanine-N-7) methyltrans...		Potri.013G070800 [exp]	2.82	0.9661
AT5G08540			unknown protein		Potri.010G254800 [exp]	3.16	0.9671
AT3G47450		RIF1, ATNOA1, A...	RESISTANT TO INHIBITION WITH F...		Potri.001G124900 [exp]	3.87	0.9666
AT3G04260		PDE324, PTAC3	PIGMENT DEFECTIVE 324, plastid...		Potri.019G025100 [exp]	5.91	0.9562
AT3G49660		AtWDR5a	human WDR5 \(WD40 repeat\) hom...		Potri.007G009500 [exp]	6.32	0.9464
AT4G33760			tRNA synthetase class II (D, K...		Potri.009G084300 [exp]	7.14	0.9495
AT1G21600		PTAC6	plastid transcriptionally acti...		Potri.002G078900 [exp]	7.93	0.9545
AT3G48500		PDE312, PTAC10	PLASTID TRANSCRIPTIONALLY ACTI...		Potri.015G091700 [exp]	8.66	0.9607
AT1G10522			unknown protein		Potri.010G094900 [exp]	9.79	0.9551

Compare expression of checked genes

Potri.008G193800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.