Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27100 494 / 2e-171 Actin cross-linking protein (.1) AT1G59710 344 / 7e-116 Protein of unknown function (DUF569) (.1) AT3G28630 325 / 1e-107 Protein of unknown function (DUF569) (.1), Protein of unknown function (DUF569) (.2) AT1G69890 309 / 2e-102 Protein of unknown function (DUF569) (.1) AT1G69900 307 / 5e-100 Actin cross-linking protein (.1) AT3G01311 276 / 4e-89 Protein of unknown function (DUF569) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G035100 [exp] 783 / 0 AT1G27100 541 / 0.0 Actin cross-linking protein (.1) Potri.004G130200 [exp] 466 / 8e-161 AT1G27100 421 / 2e-143 Actin cross-linking protein (.1) Potri.017G075900 [exp] 452 / 1e-155 AT1G27100 431 / 1e-147 Actin cross-linking protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030804 [exp] 398 / 7e-137 AT1G59710 357 / 2e-124 Protein of unknown function (DUF569) (.1) Lus10036694 [exp] 367 / 1e-124 AT1G59710 343 / 5e-119 Protein of unknown function (DUF569) (.1) Lus10001124 [exp] 304 / 3e-99 AT3G28630 313 / 1e-105 Protein of unknown function (DUF569) (.1), Protein of unknown function (DUF569) (.2) Lus10015346 [exp] 296 / 3e-96 AT3G28630 317 / 3e-107 Protein of unknown function (DUF569) (.1), Protein of unknown function (DUF569) (.2) Lus10013281 [exp] 271 / 2e-88 AT1G59710 240 / 2e-79 Protein of unknown function (DUF569) (.1) Lus10037230 [exp] 212 / 4e-63 AT1G27100 181 / 3e-54 Actin cross-linking protein (.1) Lus10037231 [exp] 202 / 2e-60 AT1G27100 192 / 2e-57 Actin cross-linking protein (.1) Lus10036693 [exp] 196 / 1e-59 AT1G27100 180 / 2e-54 Actin cross-linking protein (.1) Lus10036692 [exp] 59 / 9e-11 AT1G27100 49 / 2e-08 Actin cross-linking protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0066 [poplar] [flax] Trefoil PF04601 [poplar] [flax] DUF569 Domain of unknown function (DUF569)
Representative CDS sequence Show only first row Show all	>Potri.008G193900.1 pacid=42806672 polypeptide=Potri.008G193900.1.p locus=Potri.008G193900 ID=Potri.008G193900.1.v4.1 annot-version=v4.1 ATGGAGTTTTTTACCAAGACAAAGGCAATTAAGCTCCGGAGCCACCTTTACAAGTACTTGATCGCGGACTTCGACCAAGAAACTGTTCGTCAAACACGAC ACGGCATATCACGGAAAGCTGTCATATGGTTTGTGGAGCTGGTCGATGGAAAAAGCCATGTTATTCGTCTCAGAAACTGCTATGGCAAATACCTCGCAGC CTCTGACTTGCCCTTTTTTTTAGGCGTGACTGGGAAGAAGATACTGCAAACAGTGCCTGAAGATATTACAGACATCTGTAAGATGGAGTGGGAGCCTGTA AGAGACGGGTCTCAGGTTAAATTTAAGAGCTGGTGTGGCAATTTCTTGCGAGCTAACGGGGGGGCGCCGCCGTGGAGAAACGCAGTTACTCACGATGAGC CTCCCACTGGCTCAACACAAAAATGGATCTTTTGGGATATTGAGGCAGTACAAGTGCCTGAAAACGACTCCTTGGTGGATTACTTGTCATCTATGTCGAG CTTTTCTACAGTACCCGATGATGTTCTTGTAGCTATCTCCGGTGATTATAATAGCCCGGAACGAGCCTCTCAGCTATCGATTGTACCGGCTGCGCGGATT CCGAGATTGACCTTAGCAAAGTCAATGTTTCCAAGATTGTTTTCGTCCCCAAATAATAAGACCAAATCCAACCACTTCCGGTCAGGGATGGATTTCTTCC TCAATGCCAAAACTGTCCGTCTCCGCAGCCACCACGACAAGTACCTCCTCGCGGAGGAAGATGAGGACTCCGTAACCCAAGACCGAAATGGATCCTCCAA GATAGCCAGATGGACTGTCGAACCCGTACCTGGATCCGACTCCATTATCCGCCTCAAGTCCTGCAATGGTAAATACCTCACTGCCTCTAACGAGCCTTTT CTTTTGGGCATGACTGGTCGAAAGGTCCTTCAGACTGTACCCAGACGATTTGACTCGTCCGTCGAGTGGGAACCCGTGAGAGAAGGGGGCCAGGTGAAGC TCAAGACCCGGTATGGGAACTTCTTGAGAGCCAATGGGGGGTTGCCACCTTGGAGAAACTCGGTTACTCATGACATTCCTCATAGGAGTGCTACACAAGA TTGGATCCTTTGGGATGTTGATGTTGTGGAGACTCGAGCGCTTCAGTCTCCTACTGGCCATGCTCATTATCTACAGAAAATTGTTTCTCAGTCTGATTCT CTGGATTCCGAATCCACCTCTCCACCTTCTATCTCTATCAAATCCGGAGATTATTTAAGACAGGGGTCGAGTGATTCTAATGCTAGTTCGCCTCGGAAGT CTGACGGGAGGACAATATACTACCATGTGGCTGATGAGAGCGGTGAGGTTGATGATGATGCAACAGAGCGTTGCTCGTTGAATTTTAAGGGAAATGGGGT GGATGGGTTGACACAAAAATTGAAGGAAGATACGGGACTTGAGGATATTGTTGTGTGTACTCGCAGTCCTTTGAATGGAGAGCTTTATCCACTTCGATTG CAGCTTCCTCCAAACAATGCAGATATGCATGTTATTCTAGTTCAGCCATCGTCCAAAGTGGCCAGTGATTTTGCTGAACAAGGAACTCCTCTCTGA
AA sequence Show only first row Show all	>Potri.008G193900.1 pacid=42806672 polypeptide=Potri.008G193900.1.p locus=Potri.008G193900 ID=Potri.008G193900.1.v4.1 annot-version=v4.1 MEFFTKTKAIKLRSHLYKYLIADFDQETVRQTRHGISRKAVIWFVELVDGKSHVIRLRNCYGKYLAASDLPFFLGVTGKKILQTVPEDITDICKMEWEPV RDGSQVKFKSWCGNFLRANGGAPPWRNAVTHDEPPTGSTQKWIFWDIEAVQVPENDSLVDYLSSMSSFSTVPDDVLVAISGDYNSPERASQLSIVPAARI PRLTLAKSMFPRLFSSPNNKTKSNHFRSGMDFFLNAKTVRLRSHHDKYLLAEEDEDSVTQDRNGSSKIARWTVEPVPGSDSIIRLKSCNGKYLTASNEPF LLGMTGRKVLQTVPRRFDSSVEWEPVREGGQVKLKTRYGNFLRANGGLPPWRNSVTHDIPHRSATQDWILWDVDVVETRALQSPTGHAHYLQKIVSQSDS LDSESTSPPSISIKSGDYLRQGSSDSNASSPRKSDGRTIYYHVADESGEVDDDATERCSLNFKGNGVDGLTQKLKEDTGLEDIVVCTRSPLNGELYPLRL QLPPNNADMHVILVQPSSKVASDFAEQGTPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27100			Actin cross-linking protein (....		Potri.008G193900 [exp]	0	1
AT1G43700	bZIP	SUE3, AtbZIP51,...	sulphate utilization efficienc...		Potri.002G069500 [exp]	1.73	0.8969
AT1G64950		CYP89A5	"cytochrome P450, family 89, s...		Potri.007G087950 [exp]	2.82	0.8953
AT5G24810			ABC1 family protein (.1.2)		Potri.018G003400 [exp]	6.92	0.8931
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Potri.019G036800 [exp]	7.54	0.8946
AT1G03950		VPS2.3	vacuolar protein sorting-assoc...		Potri.002G035900 [exp]	8.48	0.8661
					Potri.014G049100 [exp]	10.95	0.8676
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Potri.007G088018 [exp]	11.40	0.8748
AT4G29790			unknown protein		Potri.006G146700 [exp]	12.40	0.8574
AT2G31130			unknown protein		Potri.013G118000 [exp]	13.41	0.8527
AT2G14910			unknown protein		Potri.001G298200 [exp]	14.45	0.8595

Compare expression of checked genes

Potri.008G193900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.