Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10350 402 / 3e-141 DNAJ heat shock family protein (.1) AT1G59725 398 / 1e-139 DNAJ heat shock family protein (.1) AT2G20560 369 / 3e-128 DNAJ heat shock family protein (.1) AT3G08910 367 / 1e-127 DNAJ heat shock family protein (.1) AT3G47940 363 / 1e-125 DNAJ heat shock family protein (.1) AT4G28480 359 / 4e-124 DNAJ heat shock family protein (.1.2) AT5G01390 358 / 4e-124 DNAJ heat shock family protein (.1.2.3.4) AT5G25530 330 / 1e-112 DNAJ heat shock family protein (.1) AT2G20550 245 / 2e-80 HSP40/DnaJ peptide-binding protein (.1.2) AT1G44160 167 / 7e-49 HSP40/DnaJ peptide-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G035000 [exp] 543 / 0 AT1G10350 429 / 1e-151 DNAJ heat shock family protein (.1) Potri.015G066100 [exp] 370 / 2e-128 AT3G47940 436 / 5e-154 DNAJ heat shock family protein (.1) Potri.018G034600 [exp] 364 / 2e-126 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.017G016100 [exp] 359 / 3e-124 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1) Potri.011G057601 [exp] 358 / 4e-124 AT2G20560 444 / 2e-157 DNAJ heat shock family protein (.1) Potri.007G136700 [exp] 347 / 1e-119 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1) Potri.007G135700 [exp] 342 / 2e-117 AT2G20560 416 / 3e-146 DNAJ heat shock family protein (.1) Potri.017G016000 [exp] 325 / 7e-111 AT2G20560 419 / 4e-147 DNAJ heat shock family protein (.1) Potri.006G246700 [exp] 279 / 6e-93 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030803 [exp] 444 / 4e-158 AT1G10350 434 / 2e-153 DNAJ heat shock family protein (.1) Lus10013280 [exp] 436 / 1e-153 AT1G10350 422 / 5e-148 DNAJ heat shock family protein (.1) Lus10036668 [exp] 390 / 2e-136 AT3G47940 454 / 6e-161 DNAJ heat shock family protein (.1) Lus10017687 [exp] 368 / 1e-127 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10005033 [exp] 367 / 4e-127 AT3G08910 503 / 0.0 DNAJ heat shock family protein (.1) Lus10027803 [exp] 364 / 3e-126 AT3G08910 504 / 0.0 DNAJ heat shock family protein (.1) Lus10013981 [exp] 349 / 3e-120 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1) Lus10015402 [exp] 343 / 6e-118 AT2G20560 483 / 7e-173 DNAJ heat shock family protein (.1) Lus10021961 [exp] 339 / 2e-116 AT5G25530 468 / 7e-167 DNAJ heat shock family protein (.1) Lus10041254 [exp] 335 / 3e-115 AT5G25530 464 / 2e-165 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0392 [poplar] [flax] PF01556 [poplar] [flax] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Potri.008G194000.1 pacid=42808298 polypeptide=Potri.008G194000.1.p locus=Potri.008G194000 ID=Potri.008G194000.1.v4.1 annot-version=v4.1 ATGGGTTTTGATTACTACAACGTACTGAAACTGAACCGCAACGCAACAGAAGATGACATGAAAAAGGCTTACAAGAGACTGGCAATGAAATGGCATCCAG ACAAGAACCCTGTAAACAAGAAAGAGGCAGAAGCCAAATTCAAGCTTATCTCCGAAGCTTACGATGTCCTATCAGACCCTAACAAGCGTCAGATCTATGA TCTCTACGGTGAAGAAGGCCTCAAGTCTTTTGATCAAGCCCCCCCTCCCAATACCAACGTCGGCGCTTCTTTCAAGTTCAATCCGCGTGACGCCGATGAT ATTTTCTCCGAATTCTTCGGAAGTGGCGGATCCGATGGTGTTGGCAAGGGTTATTTTAGGAATAATAATCATAATAGTTATGGGGCCGAGGTTAACAGGA AAGCGGCGCCCGTTGAGAGCAAGTTGCTTTGCACTTTGGAGGAGCTTTATAAAGGTACCCGAAGAAAGATGAGGATTTCCCGTTCTGTTCCTGATGACTT CGGGAAGCCGAAAACAATCGAGGAAATCTTAAAGATAGACATCAAACCTGGCTGGAAGAAGGGCACAAAAATCACTTTTCCTGAGAAAGGCAATCAAGAA CCTGGTACCATCCCCGCTGATCTTATTTTTGTGGTGGATGAGAAGCCCCATCCTGTTTTCAAGAGGGACGGGAATGATCTGGTGGTCAATCAGAAAATGT CACTACTGGAGGCTCTCACGGGGAAAACCATCGAATTGACAACCTTGGATGGAAGATATCTCACAGTCCCTGTATCGGATATTGTCAAACCGGGTCACGA GGTCCTTATCTCGGATGAAGGAATGCCCGTCTCAAAAGAGCCCAACAAGAGAGGAAACCTTCGAATCAAGTTTGATATCACATTCCCATCAAGACTTACC GCGGAACAGAAATCTGACCTCAAGAAAGCACTATCTGACAATTAA
AA sequence Show only first row Show all	>Potri.008G194000.1 pacid=42808298 polypeptide=Potri.008G194000.1.p locus=Potri.008G194000 ID=Potri.008G194000.1.v4.1 annot-version=v4.1 MGFDYYNVLKLNRNATEDDMKKAYKRLAMKWHPDKNPVNKKEAEAKFKLISEAYDVLSDPNKRQIYDLYGEEGLKSFDQAPPPNTNVGASFKFNPRDADD IFSEFFGSGGSDGVGKGYFRNNNHNSYGAEVNRKAAPVESKLLCTLEELYKGTRRKMRISRSVPDDFGKPKTIEEILKIDIKPGWKKGTKITFPEKGNQE PGTIPADLIFVVDEKPHPVFKRDGNDLVVNQKMSLLEALTGKTIELTTLDGRYLTVPVSDIVKPGHEVLISDEGMPVSKEPNKRGNLRIKFDITFPSRLT AEQKSDLKKALSDN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10350			DNAJ heat shock family protein...		Potri.008G194000 [exp]	0	1
AT1G29340		ATPUB17, PUB17	ARABIDOPSIS THALIANA PLANT U-B...		Potri.004G061800 [exp]	14.96	0.7661
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Potri.005G219100 [exp]	15.49	0.7456
AT5G57580			Calmodulin-binding protein (.1...		Potri.011G043200 [exp]	17.66	0.7941	CBP60.11
AT1G06870		Plsp2A	plastidic type I signal peptid...		Potri.014G036400 [exp]	18.00	0.7976
AT1G15780			unknown protein		Potri.003G028089 [exp]	26.15	0.7670
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014324 [exp]	28.35	0.7624
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Potri.008G148000 [exp]	33.46	0.7631	APK2.2
AT1G10020			Protein of unknown function (D...		Potri.002G112600 [exp]	41.35	0.7501
AT2G33490			hydroxyproline-rich glycoprote...		Potri.001G324800 [exp]	42.61	0.7651
AT4G35160			O-methyltransferase family pro...		Potri.013G122000 [exp]	43.88	0.7634

Compare expression of checked genes

Potri.008G194000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.