Plant FIBer expression Database

Potri.008G194200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G27090 360 / 2e-121 glycine-rich protein (.1)
AT3G24690 92 / 5e-22 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G034900
[exp]
579 / 0 AT1G27090 371 / 5e-126 glycine-rich protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037224
[exp]
358 / 1e-120 AT1G27090 356 / 7e-120 glycine-rich protein (.1)
Lus10036699
[exp]
348 / 4e-118 AT1G27090 351 / 8e-120 glycine-rich protein (.1)
PFAM info
Representative CDS sequence
>Potri.008G194200.1 pacid=42808763 polypeptide=Potri.008G194200.1.p locus=Potri.008G194200 ID=Potri.008G194200.1.v4.1 annot-version=v4.1
ATGGCGGCCGCTTCTACCTCAGAAATAACAGAGGGACCCGTCCTTAGCCTGATCACCAAACGCCTTCGCGGTCTCAAGAAGAAATTCAACCGAATCGTCC
AGATGGAAGAGTCAATCGCCCAAGGAAAGCCTATTAACAAAGAACAAGAGGACTTCCTCCGTTCCAAACCCTCTGTCGCCGCCGCAATTGATGAGCTTGA
GAAGCTGCGCCAGCCTCTCTCCGTCGCTGTCTCCGAAGAAATTGAGCTTGCTGCCCATCGACTCAACCCTAAATCTGACAGCACAGTTGTTCCGGAAGCA
AGTAATGGAGTGGTGGAGGATCTGTTGCATTTGTTTTATTTTGGGTGCTTGTTTGATGTAAGGTCCCAGAACGATTTCACTGCCACCATGTTGACTCGGA
CGCATGAAAGAGGTTGCTGCTTGACTTATGATTATGTCACTGATGATGCTACGGATCTGCTTAGCGAGAGGGATTTGGATATGATTTCTATACTGGGTGG
TGGTTTGATCATTTCGCGCCCTGTCAATTCTAGCTTATCTCATAAGAATGCTTTGCAGCGATGCATGGAGCATGCCAAGTTGTGGCTGGCTAATTCTGAC
CAACCAATTGATTCGAACGTCAACGTTTCCTATGCTGAATTGAGGGAGAAGCTCAATAAGATCATGGCTTCTGATTATTTCACTACAACACCAGAGATTA
AAGCTCCAGTGGAAATGGCTGCTGCTGCTGGCAATTATGTGCCGTTCCAAGTTCCTTTCTCAGTCCATATGGACGAAGATTCTGTGGCGCAATACCAGCC
AAAGGAACAAGAGACAGAAAATATCCAGCATGAAACTGGTGATGATCAATCTAGTCCTGCTGAGGAACTTCAGAAGGATGAACAAGAGACTGAAAACCCA
GCAGTTGTCTCGGATCAAGAAGAGCAAGACAACCCATCTACAGAAGTTGAAGTATATTACAATCAGAGAGAGGTAGAGCATGGAGAAGTTGATCATAATC
AGAGAGAGGCAGAGCCTAAGGAGCAACAATACGTTTCTCGAAGGAACTACCAGAACCAAAGAGGTGGTCGTGGCGGCGGCAATGGTGGTCGCAGGGGTTA
TTCAAATGGTCGTGGTGGTCGAAGTGGTGGTAGAGGAGGTGGTGGCTACCAGACTGACCGCAACCAACACTGTGATCAGCCCGGAAACTATTATCAGAGG
AACAACTATACTAATCAAGGAAGGGGTGTCAGAGGTGGTGGGCACACTTATAACAACAATGGTTCAACAGGTGAAGCCCCGGCTGATGTTGGGGTGGCTT
CATGA
AA sequence
>Potri.008G194200.1 pacid=42808763 polypeptide=Potri.008G194200.1.p locus=Potri.008G194200 ID=Potri.008G194200.1.v4.1 annot-version=v4.1
MAAASTSEITEGPVLSLITKRLRGLKKKFNRIVQMEESIAQGKPINKEQEDFLRSKPSVAAAIDELEKLRQPLSVAVSEEIELAAHRLNPKSDSTVVPEA
SNGVVEDLLHLFYFGCLFDVRSQNDFTATMLTRTHERGCCLTYDYVTDDATDLLSERDLDMISILGGGLIISRPVNSSLSHKNALQRCMEHAKLWLANSD
QPIDSNVNVSYAELREKLNKIMASDYFTTTPEIKAPVEMAAAAGNYVPFQVPFSVHMDEDSVAQYQPKEQETENIQHETGDDQSSPAEELQKDEQETENP
AVVSDQEEQDNPSTEVEVYYNQREVEHGEVDHNQREAEPKEQQYVSRRNYQNQRGGRGGGNGGRRGYSNGRGGRSGGRGGGGYQTDRNQHCDQPGNYYQR
NNYTNQGRGVRGGGHTYNNNGSTGEAPADVGVAS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G27090 glycine-rich protein (.1) Potri.008G194200
[exp]
0 1
AT4G20020 unknown protein Potri.004G218650
[exp]
4.58 0.8099
AT5G63920 TOP3A, AtTOP3al... topoisomerase 3alpha (.1) Potri.005G067100
[exp]
5.00 0.7206
AT5G08780 winged-helix DNA-binding trans... Potri.005G069700
[exp]
5.65 0.7257
AT1G72440 SWA2, EDA25 SLOW WALKER2, embryo sac devel... Potri.001G164100
[exp]
6.92 0.7686
AT1G62930 RPF3 RNA processing factor 3, Tetra... Potri.013G034300
[exp]
8.00 0.7113
AT5G23570 SGS3, ATSGS3 SUPPRESSOR OF GENE SILENCING 3... Potri.018G137400
[exp]
9.79 0.6648
Potri.008G009201
[exp]
12.00 0.6759
AT1G18450 ATARP4 actin-related protein 4 (.1) Potri.015G053100
[exp]
14.96 0.6940 Pt-ARP4.1
AT5G05800 unknown protein Potri.004G230401
[exp]
17.20 0.6215
AT2G31660 EMA1, URM9, SAD... UNARMED 9, SUPER SENSITIVE TO ... Potri.002G232600
[exp]
17.23 0.7073

Potri.008G194200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.