Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27070 367 / 3e-121 5'-AMP-activated protein kinase-related (.1) AT5G03420 76 / 2e-14 5'-AMP-activated protein kinase-related (.1) AT5G39790 67 / 4e-12 5'-AMP-activated protein kinase-related (.1) AT1G09020 63 / 3e-10 ATSNF4, SNF4 homolog of yeast sucrose nonfermenting 4 (.1) AT4G16360 46 / 2e-05 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G034600 [exp] 777 / 0 AT1G27070 333 / 4e-108 5'-AMP-activated protein kinase-related (.1) Potri.006G123300 [exp] 72 / 3e-13 AT5G03420 279 / 9e-86 5'-AMP-activated protein kinase-related (.1) Potri.017G125400 [exp] 69 / 1e-12 AT5G39790 291 / 1e-98 5'-AMP-activated protein kinase-related (.1) Potri.008G216800 [exp] 49 / 1e-05 AT1G09020 628 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.009G021600 [exp] 47 / 1e-05 AT5G21170 319 / 1e-109 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) Potri.010G023500 [exp] 45 / 9e-05 AT1G09020 613 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.005G028800 [exp] 44 / 0.0002 AT1G09020 683 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.013G020400 [exp] 44 / 0.0002 AT1G09020 715 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.001G220800 [exp] 43 / 0.0004 AT5G21170 316 / 1e-108 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036706 [exp] 354 / 1e-116 AT1G27070 323 / 8e-105 5'-AMP-activated protein kinase-related (.1) Lus10037220 [exp] 322 / 1e-103 AT1G27070 314 / 7e-101 5'-AMP-activated protein kinase-related (.1) Lus10030802 [exp] 233 / 3e-69 AT1G27070 204 / 2e-58 5'-AMP-activated protein kinase-related (.1) Lus10013279 [exp] 219 / 2e-64 AT1G27070 198 / 1e-56 5'-AMP-activated protein kinase-related (.1) Lus10028512 [exp] 71 / 5e-13 AT5G39790 297 / 5e-101 5'-AMP-activated protein kinase-related (.1) Lus10029909 [exp] 58 / 1e-08 AT1G09020 749 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10004490 [exp] 58 / 1e-08 AT1G09020 754 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10037504 [exp] 52 / 2e-07 AT1G09020 195 / 5e-60 homolog of yeast sucrose nonfermenting 4 (.1) Lus10037424 [exp] 53 / 3e-07 AT5G21170 305 / 2e-104 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) Lus10041287 [exp] 51 / 1e-06 AT5G21170 295 / 6e-100 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0369 [poplar] [flax] GHD PF16561 [poplar] [flax] AMPK1_CBM Glycogen recognition site of AMP-activated protein kinase
Representative CDS sequence Show only first row Show all	>Potri.008G194300.1 pacid=42808403 polypeptide=Potri.008G194300.1.p locus=Potri.008G194300 ID=Potri.008G194300.1.v4.1 annot-version=v4.1 ATGCTCCACTCAATCACTCACGCACCTAACTGCTCCGTAGATTTGAGCCCTCGGATCTTTCTTCCCTCCATGCAACTTGAAGCTACATCTAATAGTCATA ATCTTCTCATAAAAGGAAAAGTAAGCAACCAAGAGTTACGCTTTCTTGCAGTGAAGGAGACGAGTGGATTTCTTGAACTGAAAAGAAGCTGGTGGGGTTC TGGTGGTGGGTTTGTAAGGAGGTGTAATAGAAGGGATTGGGAAAGTTGTGGGAGCGATATTGCATTGGAGACTGAGATTTTGGAGTTCATGAAGAATTCA GAAAATCCACTGATGTTTCCCAGCAAGAAACAGTTGATTGATGCTGGAAGAATGGATCTTGTTGATGCTATCTTGAAGGAAGGAGGTTGGCTCGCGTTGG GTTGGGATTTTGATGATAATGCTGATGTAGTGGATTGCTATTCTTCTTTAACGGATAATAAAGAATGCAGTACTGCAGAAATTCAAGATAAGGCTTTAGA GTGTAATAAAGGACAAAGCTCTCAGGTTTCTTGCTCGTCCTCTAGTACATCACTAGAAACAGCGACTGAGGATGATGCTGGGATTGGGGGTATACTGTAT CGATTAGAGAAAGAAAGGAATATGAATTTAGGGTTTGCTTTGAAAGAGATTGAAAGCACTACTCGTGTCCAGAGTAGCGACATTAACCATGATTGGCTCC CTAAAACCACAAAGAATGGGACAGTTGCTGGCCTCAATGTTGACAATATACCTGGATTATTAAACCCCAACAGTGGTGTAATCAATGATTTGGAAGGTGA GCTTGATCATAGCAGATCTTTCTCAAACACTGATGGTTCTGGAAATTCGCTAAATCCAGATACGTGGAGAATTTGGAGCATTAAGAGGGCAGGGTTTTCA GACATGCAATTTGAAGCTGAAGAACTTAGCTCTAATAGAACTCGTACAGGAAGCGAGGAGAATGTTTTAGGAGATGAAATACTTGAAACAAAGGAGGGTT CTAGTGAAACTGTCAGCAGAAGTCAAGAGAATTGCTCTGATGGAGGGATTAATCAGAATCAAGTACGAAGTCTACGTGATCTGGAGTTAGAGCTTTCCTC CGTGCTGCAGGCATTGAAGTCAAACACTGGTGAAAGTTTATCACAGAAAGTGGATAATGGAAGCTCCTCTGGTGATTTTCTGAAGCTTTCTGATTCTTGG GAGTTCCAGGAAAATGAGATCATGAATGCCCAGGATAAATTACGGTCAATAAGGGCAAAATTGGCAGTGTTGGAAGGGAAGATGGCACTTGCAATAATTG ATGCACAAAAGTTTGTAGAAGAGAAACAGAAAAGGATTGATGATGCTTCTAGAGCTTTGCAGCTTCTCCGCGCTGCTTGTATAGTTTGGCCTAGTTCTGC CTTAGAGGTGTTCCTATCTGGATCGTTTGATGGCTGGGCAACCCAGAGAAGGATGGAAAAGTCTAGTGTGGGTATCTTTTCTTTGTATCTGAAACTGTAT CCGGGCAGATATGAGATCAAGTTCGTTGTTGATGGTGAGTGGAAGATCGATCCCCTACGCCCTATTGTTAACAACAACGGATACGAGAATAATCTGCTCA TTATCAAATAA
AA sequence Show only first row Show all	>Potri.008G194300.1 pacid=42808403 polypeptide=Potri.008G194300.1.p locus=Potri.008G194300 ID=Potri.008G194300.1.v4.1 annot-version=v4.1 MLHSITHAPNCSVDLSPRIFLPSMQLEATSNSHNLLIKGKVSNQELRFLAVKETSGFLELKRSWWGSGGGFVRRCNRRDWESCGSDIALETEILEFMKNS ENPLMFPSKKQLIDAGRMDLVDAILKEGGWLALGWDFDDNADVVDCYSSLTDNKECSTAEIQDKALECNKGQSSQVSCSSSSTSLETATEDDAGIGGILY RLEKERNMNLGFALKEIESTTRVQSSDINHDWLPKTTKNGTVAGLNVDNIPGLLNPNSGVINDLEGELDHSRSFSNTDGSGNSLNPDTWRIWSIKRAGFS DMQFEAEELSSNRTRTGSEENVLGDEILETKEGSSETVSRSQENCSDGGINQNQVRSLRDLELELSSVLQALKSNTGESLSQKVDNGSSSGDFLKLSDSW EFQENEIMNAQDKLRSIRAKLAVLEGKMALAIIDAQKFVEEKQKRIDDASRALQLLRAACIVWPSSALEVFLSGSFDGWATQRRMEKSSVGIFSLYLKLY PGRYEIKFVVDGEWKIDPLRPIVNNNGYENNLLIIK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27070			5'-AMP-activated protein kinas...		Potri.008G194300 [exp]	0	1
AT5G13610			Protein of unknown function (D...		Potri.008G045200 [exp]	1.41	0.8407
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Potri.015G005000 [exp]	1.41	0.8448
AT3G57560		NAGK	N-acetyl-l-glutamate kinase (....		Potri.018G001600 [exp]	5.29	0.7832
AT5G66240			Transducin/WD40 repeat-like su...		Potri.005G114600 [exp]	5.83	0.7536
AT4G39870			TLD-domain containing nucleola...		Potri.005G075800 [exp]	6.00	0.7798
					Potri.013G037900 [exp]	6.92	0.8014
AT5G04130		GYRB2	DNA GYRASE B2 (.1.2)		Potri.006G039400 [exp]	10.19	0.7799
AT2G46090			Diacylglycerol kinase family p...		Potri.002G162900 [exp]	10.24	0.7459
AT3G55960			Haloacid dehalogenase-like hyd...		Potri.016G116700 [exp]	13.30	0.7075
AT5G19830			Peptidyl-tRNA hydrolase family...		Potri.001G005000 [exp]	14.07	0.7869

Compare expression of checked genes

Potri.008G194300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.