Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15150 122 / 2e-32 HD ATHB3, HAT7, ATHB-3 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) AT3G01470 117 / 5e-31 HD HD-ZIP-1, HAT5, ATHB1, ATHB-1 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) AT3G01220 116 / 1e-30 HD ATHB20 homeobox protein 20 (.1) AT4G40060 114 / 7e-30 HD ATHB16 ,ATHB-16 homeobox protein 16 (.1) AT1G69780 113 / 3e-29 HD ATHB13 Homeobox-leucine zipper protein family (.1) AT2G22430 113 / 4e-29 HD ATHB6 homeobox protein 6 (.1) AT5G65310 109 / 9e-28 HD ATHB-5, ATHB5 homeobox protein 5 (.1.2) AT1G27045 102 / 1e-25 ATHB54 homeobox protein 54, Homeobox-leucine zipper protein family (.1) AT1G26960 102 / 1e-25 HD ATHB23 homeobox protein 23 (.1) AT2G36610 94 / 4e-23 HD ATHB22 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 22, homeobox protein 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G065400 [exp] 203 / 1e-63 AT3G01470 136 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.012G070900 [exp] 193 / 1e-59 AT3G01470 145 / 1e-41 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.010G093400 [exp] 115 / 5e-30 AT1G69780 308 / 5e-105 Homeobox-leucine zipper protein family (.1) Potri.002G100600 [exp] 114 / 8e-30 AT4G40060 191 / 1e-59 homeobox protein 16 (.1) Potri.005G071900 [exp] 114 / 2e-29 AT2G22430 248 / 6e-81 homeobox protein 6 (.1) Potri.007G097100 [exp] 114 / 2e-29 AT2G22430 250 / 9e-82 homeobox protein 6 (.1) Potri.008G148200 [exp] 110 / 3e-28 AT1G69780 333 / 6e-115 Homeobox-leucine zipper protein family (.1) Potri.005G161500 [exp] 109 / 5e-28 AT4G40060 187 / 4e-58 homeobox protein 16 (.1) Potri.017G081700 [exp] 108 / 2e-27 AT5G15150 248 / 5e-81 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013277 [exp] 153 / 1e-44 AT3G01470 130 / 2e-36 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10037218 [exp] 152 / 5e-44 AT3G01470 140 / 7e-40 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10036709 [exp] 150 / 3e-43 AT3G01470 139 / 2e-39 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10030800 [exp] 148 / 6e-43 AT3G01470 135 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10036674 [exp] 142 / 6e-40 AT3G01470 153 / 8e-45 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10042180 [exp] 129 / 7e-35 AT3G01470 159 / 6e-47 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10033102 [exp] 127 / 2e-34 AT3G01470 151 / 4e-44 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10004270 [exp] 124 / 6e-33 AT3G01470 152 / 5e-44 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10022225 [exp] 122 / 6e-33 AT3G01470 270 / 2e-90 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10008795 [exp] 122 / 8e-33 AT3G01470 261 / 3e-87 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain CL0123 [poplar] [flax] PF02183 [poplar] [flax] HALZ Homeobox associated leucine zipper
Representative CDS sequence Show only first row Show all	>Potri.008G194400.2 pacid=42808338 polypeptide=Potri.008G194400.2.p locus=Potri.008G194400 ID=Potri.008G194400.2.v4.1 annot-version=v4.1 ATGGCGGGTGATAAAGACTGTGGCAGTTCTAAAATGACCATTTTTCTTCGAAACGGCAGGCTCCCTCCTTGTGAATCTCTCTGTATTCTCACCTCTTTTA GCACTCTTCATGGTGCAAAATCTATGGTTAATTTTAGGAATGATGGAGGAGACACTGTAGACATGTCTTTTTTCCAACCACATGTCAAAGAAGAAAGTAG CGATGAGGATTATGATGCGCACCTTAAGCCATCTGAAAAGAAAAGGCGGCTTACAGCTGCTCAAGTCCAGTTTCTTGAGAAGAGCTTTGAGGCGGAGAAT AAGCTTGAACCAGAGAGGAAGATGCAGCTTGCTAAAGAACTCGGTTTGCAGCCTCGCCAGGTTGCAGTATGGTTTCAAAACCGTAGAGCTCGGTTCAAGA ACAAGCAGCTGGAAAGGGACTACGACTCCTTGAGAATCAGCTTTGACAAACTCAAGGCTGATTATGACAAACTCCTCCTCGAGAAGCAGAATTTGAAAAA CGAGCTTCTTTCACTGAAAGAAAAATTGCTTAGCAGAGAGGAAAGTATGGAAAGTTCAGAACCATTTGATGTCATCCATTCACCGGATGCAGAACTTGAG CCTATGCCTGATACAGTGTCTGAAAATGTTTCCGCCATTGTGCCAATGGTGACACCCAAACAAGAAGAAAGTTCAGCTAAAAATGATGTTTTCAACTCAG ACAGCCCACGTTCATTTTTGGAGCCCCGTGATTGTTATCGTGTTTTCGAGTCAGACCAACCAGATTTTTCCCAAGTTGAAGAAGATAATCTCACCAGGAG CTTTCTACCCCCTCCGTACTTTCCAAAACTCTACCGAGAGCCACCTGCAAGTTCACGTAATTTTGAATTCTCAGCGGAAGATCAGCCCTTTTGGTCCTGG ATTTACTGA
AA sequence Show only first row Show all	>Potri.008G194400.2 pacid=42808338 polypeptide=Potri.008G194400.2.p locus=Potri.008G194400 ID=Potri.008G194400.2.v4.1 annot-version=v4.1 MAGDKDCGSSKMTIFLRNGRLPPCESLCILTSFSTLHGAKSMVNFRNDGGDTVDMSFFQPHVKEESSDEDYDAHLKPSEKKRRLTAAQVQFLEKSFEAEN KLEPERKMQLAKELGLQPRQVAVWFQNRRARFKNKQLERDYDSLRISFDKLKADYDKLLLEKQNLKNELLSLKEKLLSREESMESSEPFDVIHSPDAELE PMPDTVSENVSAIVPMVTPKQEESSAKNDVFNSDSPRSFLEPRDCYRVFESDQPDFSQVEEDNLTRSFLPPPYFPKLYREPPASSRNFEFSAEDQPFWSW IY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15150	HD	ATHB3, HAT7, AT...	HOMEOBOX FROM ARABIDOPSIS THAL...		Potri.008G194400 [exp]	0	1
AT2G30150			UDP-Glycosyltransferase superf...		Potri.009G077400 [exp]	3.16	0.8205
AT4G17980	NAC	ANAC071	NAC domain containing protein ...		Potri.014G075901 [exp]	5.47	0.7948
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Potri.008G010500 [exp]	7.41	0.7979	AGO912
AT3G01930			Major facilitator superfamily ...		Potri.017G064201 [exp]	10.24	0.8137
					Potri.017G065250 [exp]	16.00	0.7901
AT3G19270		CYP707A4	"cytochrome P450, family 707, ...		Potri.004G140900 [exp]	16.97	0.6782	Pt-CYP707.5
AT5G08450			unknown protein		Potri.018G145552 [exp]	19.89	0.7789
AT1G16260			Wall-associated kinase family ...		Potri.009G157201 [exp]	39.94	0.7926
AT1G05610		APS2	ADP-glucose pyrophosphorylase ...		Potri.017G001700 [exp]	40.74	0.6704
AT4G39110			Malectin/receptor-like protein...		Potri.009G120400 [exp]	49.13	0.7236

Compare expression of checked genes

Potri.008G194400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.