Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15080 670 / 0 Protein kinase superfamily protein (.1) AT3G01300 637 / 0 Protein kinase superfamily protein (.1) AT3G28690 625 / 0 Protein kinase superfamily protein (.1.2.3) AT5G02290 446 / 2e-155 NAK Protein kinase superfamily protein (.1.2) AT1G07570 446 / 5e-155 APK1A Protein kinase superfamily protein (.1.2.3) AT2G28930 444 / 7e-154 APK1B protein kinase 1B (.1.2.3) AT5G01020 437 / 2e-151 Protein kinase superfamily protein (.1) AT2G39660 422 / 7e-146 BIK1 botrytis-induced kinase1 (.1) AT2G02800 421 / 7e-145 Kin2, APK2B protein kinase 2B (.1.2) AT1G14370 417 / 2e-143 Kin1, PBL2, APK2A PBS1-like 2, kinase 1, protein kinase 2A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G033800 [exp] 840 / 0 AT5G15080 669 / 0.0 Protein kinase superfamily protein (.1) Potri.017G077300 [exp] 697 / 0 AT5G15080 690 / 0.0 Protein kinase superfamily protein (.1) Potri.004G123800 [exp] 689 / 0 AT5G15080 694 / 0.0 Protein kinase superfamily protein (.1) Potri.004G129000 [exp] 672 / 0 AT5G15080 659 / 0.0 Protein kinase superfamily protein (.1) Potri.006G066100 [exp] 501 / 3e-176 AT5G15080 503 / 6e-177 Protein kinase superfamily protein (.1) Potri.018G127300 [exp] 496 / 2e-174 AT3G01300 498 / 5e-175 Protein kinase superfamily protein (.1) Potri.009G031300 [exp] 463 / 1e-161 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3) Potri.001G240400 [exp] 460 / 2e-160 AT1G07570 590 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G203400 [exp] 452 / 4e-157 AT2G28930 540 / 0.0 protein kinase 1B (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030796 [exp] 712 / 0 AT5G15080 691 / 0.0 Protein kinase superfamily protein (.1) Lus10030668 [exp] 704 / 0 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1) Lus10005255 [exp] 697 / 0 AT5G15080 720 / 0.0 Protein kinase superfamily protein (.1) Lus10013273 [exp] 533 / 6e-180 AT3G17900 696 / 0.0 unknown protein Lus10038087 [exp] 494 / 2e-173 AT5G15080 499 / 6e-175 Protein kinase superfamily protein (.1) Lus10006643 [exp] 492 / 2e-172 AT5G15080 495 / 2e-173 Protein kinase superfamily protein (.1) Lus10024391 [exp] 450 / 2e-156 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2) Lus10002697 [exp] 449 / 2e-156 AT1G07570 543 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10023794 [exp] 447 / 4e-156 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10000954 [exp] 447 / 2e-155 AT1G07570 535 / 0.0 Protein kinase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.008G194700.4 pacid=42806903 polypeptide=Potri.008G194700.4.p locus=Potri.008G194700 ID=Potri.008G194700.4.v4.1 annot-version=v4.1 ATGGGTTTAGGCAGTGAAGAAGGTAAAGTGAAGTCTTCTTGGGATGTGTGCAAATCAAAGGAGAGGAAGAAGAAAGATGGTACAAAGGCGGGGTGTTGGG TCAAGTTAAGGCTTGTTGGGGGCTGCATTTCGTCAAGATCCAAAGTTGATAGCTCTGTTAGTGGGACTAGTACCCATTTTGAAAGTAAATCCATAAATGA TACAAGCACAGACCAACCAGCTGTTCCTGTTGTCTCATCGTCAACCACAAGCAATACAGAAAGTAATTCATCCCTTTCCAAACTTGAAGAGGAGCTTAAA GTTGCTTCTCGACTGCGGAAGTTCACATTTAATGATCTCAAACTGGCAACTCGAAATTTTAGACCTGAGAGTCTTCTTGGTGAAGGTGGCTTTGGTTGTG TTTTCAAGGGATGGATTGAAGAAAATGGAACTGCTCCGGTGAAACCTGGTACTGGCCTTACCGTTGCTGTTAAAACCCTTAATCATGATGGGCTCCAGGG TCATAAAGAATGGCTGGCTGAAGTAAATTACCTTGGTGATCTTGTTCATCCTAACCTGGTTAAACTGATTGGTTACTGCATTGAAGATGATCAAAGGCTG CTAGTTTACGAGTTCATGCCTCGAGGAAGCTTGGAGAACCACCTATTTCGACGGTCCCTACCTCTTCCATGGTCTATAAGAATGAAAATCGCTCTCGGTG CTGCCAAAGGTCTTGCCTTTCTTCATGAAGAAGCTGAAAGGCCAGTGATTTATCGTGATTTCAAAACCTCCAATATATTATTAGATGCGGATTACAATGC CAAGCTTTCTGATTTTGGACTTGCCAAAGATGCTCCCGAGGGAGATAAGACCCATGTATCAACCCGGGTGATGGGAACTTATGGTTATGCAGCCCCAGAG TATGTAATGACCGGACATCTTACATCAAGGAGCGACGTCTACAGTTTTGGTGTGGTCTTGCTTGAAATGATAACCGGCAGGAGATCCATGGATAAGAACC GTCCTAATGGAGAGCATAATCTTGTTGAGTGGGCGAGGCCATATCTAGGAGAGAGAAGAAGATTCTACCGGCTGATAGACCCTCGACTTCAAGGTCACTT TTCAATAAAAGGAGCCCAGAAAGCTGCACAGCTGGCTGCTCATTGCCTTAGCAGGGATCCTAAAGCCAGGCCTCTAATGAGTGAAGTGGTCGACACATTG AAGCCTCTGCCCAACCTCAAGGACATGGCAAGCTCATCGTATTATTTCCAGACCATGCAAGGTGACCGGGTTGGGTCTAGCCCAAATGCCAAAAATGGTG TCCGCTCACAGGCTGGATTGTTATCTCGGAATGGGCACCAACAAAGGAGTTTTTCAATACCACATGGTCCCCATGCTTCTCCTTTCCACCATCAATATCC CCACCAATCTCCAAAACCCAGTGGCAAACCATAG
AA sequence Show only first row Show all	>Potri.008G194700.4 pacid=42806903 polypeptide=Potri.008G194700.4.p locus=Potri.008G194700 ID=Potri.008G194700.4.v4.1 annot-version=v4.1 MGLGSEEGKVKSSWDVCKSKERKKKDGTKAGCWVKLRLVGGCISSRSKVDSSVSGTSTHFESKSINDTSTDQPAVPVVSSSTTSNTESNSSLSKLEEELK VASRLRKFTFNDLKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNYLGDLVHPNLVKLIGYCIEDDQRL LVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEGDKTHVSTRVMGTYGYAAPE YVMTGHLTSRSDVYSFGVVLLEMITGRRSMDKNRPNGEHNLVEWARPYLGERRRFYRLIDPRLQGHFSIKGAQKAAQLAAHCLSRDPKARPLMSEVVDTL KPLPNLKDMASSSYYFQTMQGDRVGSSPNAKNGVRSQAGLLSRNGHQQRSFSIPHGPHASPFHHQYPHQSPKPSGKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15080			Protein kinase superfamily pro...		Potri.008G194700 [exp]	0	1
AT4G05420		DDB1A	damaged DNA binding protein 1A...		Potri.001G357900 [exp]	6.08	0.7298	Pt-DDB1.1
AT2G22400			S-adenosyl-L-methionine-depend...		Potri.007G096100 [exp]	11.18	0.7699
AT5G49980		AFB5	auxin F-box protein 5 (.1)		Potri.005G159300 [exp]	12.32	0.7443
AT3G14840			Leucine-rich repeat transmembr...		Potri.001G385500 [exp]	22.97	0.7710
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Potri.015G089500 [exp]	27.71	0.7229	Pt-ATGSL08.1
AT1G80260		EMB1427	embryo defective 1427, Spc97 /...		Potri.014G184801 [exp]	33.67	0.6818
AT4G39850		AtABCD1, ACN2, ...	PEROXISOME DEFECTIVE 3, COMATO...		Potri.007G092200 [exp]	35.09	0.7537
AT1G35460	bHLH	bHLH080	basic helix-loop-helix (bHLH) ...		Potri.019G079900 [exp]	35.15	0.7513
AT1G25472		CPuORF54	conserved peptide upstream ope...		Potri.008G120050 [exp]	36.00	0.7169
AT1G80460		GLI1, NHO1	nonhost resistance to P. s. ph...		Potri.003G030900 [exp]	37.94	0.7489	Pt-NHO1.1

Compare expression of checked genes

Potri.008G194700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.