Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-AGPL2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19220 801 / 0 ADG2, APL1 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) AT1G27680 635 / 0 APL2 ADPGLC-PPase large subunit (.1) AT4G39210 594 / 0 APL3 Glucose-1-phosphate adenylyltransferase family protein (.1) AT2G21590 569 / 0 APL4 Glucose-1-phosphate adenylyltransferase family protein (.1.2) AT5G48300 481 / 5e-166 APS1, ADG1 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) AT1G05610 314 / 1e-101 APS2 ADP-glucose pyrophosphorylase small subunit 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G033400 [exp] 647 / 0 AT1G27680 822 / 0.0 ADPGLC-PPase large subunit (.1) Potri.014G110000 [exp] 646 / 0 AT1G27680 737 / 0.0 ADPGLC-PPase large subunit (.1) Potri.005G229700 [exp] 641 / 0 AT1G27680 810 / 0.0 ADPGLC-PPase large subunit (.1) Potri.004G157100 [exp] 605 / 0 AT4G39210 808 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Potri.009G118800 [exp] 605 / 0 AT4G39210 808 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Potri.014G171800 [exp] 482 / 1e-166 AT5G48300 885 / 0.0 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) Potri.007G146100 [exp] 331 / 5e-108 AT1G05610 529 / 0.0 ADP-glucose pyrophosphorylase small subunit 2 (.1) Potri.017G001700 [exp] 327 / 5e-106 AT1G05610 532 / 0.0 ADP-glucose pyrophosphorylase small subunit 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034053 [exp] 815 / 0 AT5G19220 832 / 0.0 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) Lus10010515 [exp] 806 / 0 AT5G19220 827 / 0.0 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) Lus10007209 [exp] 619 / 0 AT1G27680 715 / 0.0 ADPGLC-PPase large subunit (.1) Lus10010088 [exp] 602 / 0 AT1G27680 697 / 0.0 ADPGLC-PPase large subunit (.1) Lus10023553 [exp] 590 / 0 AT4G39210 730 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Lus10040437 [exp] 557 / 0 AT4G39210 697 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Lus10016069 [exp] 481 / 3e-166 AT5G48300 895 / 0.0 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) Lus10025187 [exp] 481 / 3e-166 AT5G48300 895 / 0.0 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) Lus10042456 [exp] 294 / 2e-93 AT1G05610 504 / 4e-176 ADP-glucose pyrophosphorylase small subunit 2 (.1) Lus10026213 [exp] 253 / 4e-78 AT1G05610 437 / 1e-150 ADP-glucose pyrophosphorylase small subunit 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF00483 [poplar] [flax] NTP_transferase Nucleotidyl transferase
Representative CDS sequence Show only first row Show all	>Potri.008G195100.1 pacid=42808741 polypeptide=Potri.008G195100.1.p locus=Potri.008G195100 ID=Potri.008G195100.1.v4.1 annot-version=v4.1 ATGACAGTCTCTGCCGATGTCCGGTTCTCCCTCTCAGCTGCAGCTGCTGGCCAGTTGCATGGCGCCAGAGGATTGGGAGTGAGGAGATATTGCTCGAGAC TTGTGAAGTTTGGCAATGGAGAGTTGATGGGAAATAAGTTGAAGTTAAACCAACTTCATCAAGGAACTAGTACTCTTGCTGTTAGAATTCCTAAGCAACA AGTTTGCATGTCTCTTACTACTGATGTAGCAATGGAGTCCAGGTTGAGGGACCTAGAGATGGAAAAAAGGGATCCACGGACAGTCGTGGCTGTTATTCTT GGTGGAGGAGCCGGTACTCGTCTTTTCCCTCTGACAAAGCGCCGAGCCAAACCTGCTGTCCCAATCGGAGGTTCATACAGACTGATAGATGTGCCAATGA GCAACTGCATCAACAGTGGAATCAACAAGGTATACATCCTCACTCAATACAACTCAGCATCACTAAATAGGCATCTTGCTCGTGCCTACAACCTCGGTAA TGGAGTCAGTTTTGGAGATGGTTTTGTAGAGGCCCTGGCAGCTACTCAAACTCCTGGAGAGGCAGGTAAAAAGTGGTTCCAGGGCACCGCTGATGCTGTG CGGCAATTTCATTGGCTTTTTGAGGGCCCAAGAAGCAAGGAGATTGAGGATGTGCTAATTCTTTCTGGAGATCACTTGTATCGAATGGACTACATGGACT TTGTGCAGAATCATCGGCAGGGTGGTGCAGATATTACTCTCTCTTGTCTACCGATGGATGATAGCCGGGCCTCAGATTTTGGTCTCATGAAGATTGACAA TAAGGGGAGAGTCCTTTCATTCAGTGAAAAACCGAAGGGGGTTGACCTGAAGGCAATGGAAGTCGATACGACAGTATTGGGGCTTTCGAAGGAAGAAGCT TTAAAGAAACCATACATTGCTTCAATGGGAGTGTATGTCTTCAAGAAGGAGATACTTTTGAACCTTTTAAGGTGGCGTTTTCCAACTGCAAATGACTTTG GATCAGAGATAATTCCAGCTTCGGCAAAAGAATTTTATATGAAGGCGTATCTCTTCAATGATTATTGGGAAGACATAGGAACCATCAGATCCTTCTTTGC AGCAAATCTTGCCCTCACTGAGCATCCTCCAAGGTTTAGTTTCTATGATGCAGCAAAGCCAATGTATACATCACGAAGAAACCTACCCCCATCCAAGATT GACAGTAGCAAGATAGTTGATTCAATCATATCTCATGGAAGTTTCTTAAACAACTGCTTCATCGAACACAGTGTAATTGGTATCCGATCTCGAATAAACT CAAATGCCCACTTACAGGATACAGTAATGCTTGGTGCTGACTTTTATGAAACGGAAGCTGAAGTGGCATCAGTGGTTGCTGAAGGAAGTGTACCGGTTGG GATAGGAGAAAACACAAAAATCAAAGAATGCATAATCGATAAAAATGCCAGAATTGGGAAGAATGTCGTTATTGCAAATTCAGAGGGCATACAAGAGGCC GATAGATCCATGGAAGGCTTCTACATCCGATCTGGTGTTACGGTCATATTAAAGAACTCTGTTATTCAAGATGGAACTGTAATATAA
AA sequence Show only first row Show all	>Potri.008G195100.1 pacid=42808741 polypeptide=Potri.008G195100.1.p locus=Potri.008G195100 ID=Potri.008G195100.1.v4.1 annot-version=v4.1 MTVSADVRFSLSAAAAGQLHGARGLGVRRYCSRLVKFGNGELMGNKLKLNQLHQGTSTLAVRIPKQQVCMSLTTDVAMESRLRDLEMEKRDPRTVVAVIL GGGAGTRLFPLTKRRAKPAVPIGGSYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNLGNGVSFGDGFVEALAATQTPGEAGKKWFQGTADAV RQFHWLFEGPRSKEIEDVLILSGDHLYRMDYMDFVQNHRQGGADITLSCLPMDDSRASDFGLMKIDNKGRVLSFSEKPKGVDLKAMEVDTTVLGLSKEEA LKKPYIASMGVYVFKKEILLNLLRWRFPTANDFGSEIIPASAKEFYMKAYLFNDYWEDIGTIRSFFAANLALTEHPPRFSFYDAAKPMYTSRRNLPPSKI DSSKIVDSIISHGSFLNNCFIEHSVIGIRSRINSNAHLQDTVMLGADFYETEAEVASVVAEGSVPVGIGENTKIKECIIDKNARIGKNVVIANSEGIQEA DRSMEGFYIRSGVTVILKNSVIQDGTVI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19220		ADG2, APL1	ADP GLUCOSE PYROPHOSPHORYLASE ...		Potri.008G195100 [exp]	0	1	Pt-AGPL2.1
AT3G54050		HCEF1	high cyclic electron flow 1 (....		Potri.016G106900 [exp]	1.73	0.9798	FBP.1
AT3G50820		OEC33, PSBO2, P...	OXYGEN EVOLVING COMPLEX SUBUNI...		Potri.005G130400 [exp]	2.82	0.9775	Pt-PSBO.1
AT1G08465	YABBY	YAB2	YABBY2, Plant-specific transcr...		Potri.016G067300 [exp]	5.47	0.9570
AT3G18890		AtTic62	translocon at the inner envelo...		Potri.009G111323 [exp]	6.48	0.9633
AT1G09340		CSP41B, CRB, HI...	heteroglycan-interacting prote...		Potri.013G006100 [exp]	7.74	0.9669
AT5G35630		ATGSL1, GLN2, G...	GLUTAMINE SYNTHETASE LIKE 1, g...		Potri.008G200100 [exp]	9.38	0.9619	Pt-NCPGS.8
AT3G18890		AtTic62	translocon at the inner envelo...		Potri.004G150300 [exp]	9.94	0.9588	Pt-TIC62.1
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Potri.010G045100 [exp]	11.74	0.9662
AT4G39970			Haloacid dehalogenase-like hyd...		Potri.007G095200 [exp]	12.96	0.9484
AT2G24720		ATGLR2.2	glutamate receptor 2.2 (.1)		Potri.018G012300 [exp]	13.00	0.9533

Compare expression of checked genes

Potri.008G195100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.