Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47900 544 / 0 TUB AtTLP3 tubby like protein 3 (.1.2.3) AT3G06380 434 / 9e-152 TUB ATTLP9 tubby-like protein 9 (.1) AT5G18680 423 / 2e-147 TUB AtTLP11 tubby like protein 11 (.1) AT1G43640 397 / 8e-137 TUB AtTLP5 tubby like protein 5 (.1) AT1G25280 397 / 1e-136 TUB AtTLP10 tubby like protein 10 (.1.2.3) AT2G18280 384 / 4e-132 TUB AtTLP2 tubby like protein 2 (.1.2) AT1G76900 382 / 1e-130 TUB AtTLP1 tubby like protein 1 (.1.2) AT1G47270 377 / 3e-129 TUB AtTLP6 tubby like protein 6 (.1.2) AT1G53320 342 / 1e-115 TUB AtTLP7 tubby like protein 7 (.1) AT1G61940 70 / 9e-14 TUB AtTLP4 tubby like protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G031000 [exp] 707 / 0 AT2G47900 531 / 0.0 tubby like protein 3 (.1.2.3) Potri.005G192300 [exp] 425 / 8e-148 AT1G76900 609 / 0.0 tubby like protein 1 (.1.2) Potri.005G192400 [exp] 421 / 2e-146 AT1G76900 607 / 0.0 tubby like protein 1 (.1.2) Potri.002G068200 [exp] 417 / 2e-144 AT1G76900 603 / 0.0 tubby like protein 1 (.1.2) Potri.005G228500 [exp] 407 / 1e-140 AT1G47270 472 / 7e-166 tubby like protein 6 (.1.2) Potri.005G121600 [exp] 406 / 2e-140 AT2G18280 504 / 4e-179 tubby like protein 2 (.1.2) Potri.002G034600 [exp] 400 / 3e-138 AT1G47270 490 / 4e-173 tubby like protein 6 (.1.2) Potri.007G023400 [exp] 399 / 9e-138 AT2G18280 519 / 0.0 tubby like protein 2 (.1.2) Potri.001G390200 [exp] 363 / 5e-124 AT1G53320 516 / 0.0 tubby like protein 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033977 [exp] 568 / 0 AT2G47900 548 / 0.0 tubby like protein 3 (.1.2.3) Lus10012803 [exp] 551 / 0 AT2G47900 523 / 0.0 tubby like protein 3 (.1.2.3) Lus10028579 [exp] 407 / 2e-140 AT1G25280 597 / 0.0 tubby like protein 10 (.1.2.3) Lus10018884 [exp] 405 / 6e-140 AT1G76900 596 / 0.0 tubby like protein 1 (.1.2) Lus10034106 [exp] 398 / 5e-137 AT1G25280 585 / 0.0 tubby like protein 10 (.1.2.3) Lus10029780 [exp] 397 / 1e-136 AT1G76900 615 / 0.0 tubby like protein 1 (.1.2) Lus10043482 [exp] 396 / 5e-136 AT1G25280 589 / 0.0 tubby like protein 10 (.1.2.3) Lus10033208 [exp] 380 / 3e-130 AT1G47270 476 / 1e-167 tubby like protein 6 (.1.2) Lus10014299 [exp] 379 / 1e-129 AT2G18280 492 / 5e-174 tubby like protein 2 (.1.2) Lus10010645 [exp] 378 / 1e-129 AT1G47270 471 / 6e-166 tubby like protein 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain CL0395 [poplar] [flax] Tubby_C PF01167 [poplar] [flax] Tub Tub family
Representative CDS sequence Show only first row Show all	>Potri.008G195200.9 pacid=42807011 polypeptide=Potri.008G195200.9.p locus=Potri.008G195200 ID=Potri.008G195200.9.v4.1 annot-version=v4.1 ATGTCAGCTATTAAGAGCATAATTAACAGGTCAAGATCACACAGGGTGGTCCAGTACAGCTCAGCACCAGACCTGAGTCTGTTTGGAGGTGGATGTGGTG CAGAAACTACTTCATGTTGGGCTAATTTGCCACAAGAATTATTAAGAGAAGTGCTTATTAGAATAGAAGAATCGGAGAGCAGTTGGCCACCAAGAAAAAA TGTGGTGGCTTGTGCTGGGGTTTGTAGGAGTTGGAGAGATATAACTAAAGAGTTAGTTAAAGTCCCTGAACTTTCTGGCAAACTCACTTTCCCGATATCT GTCAAGCAGCCTGGTCCAAGGGATTTTCTCCTTCAGTGCTTCATAAAGCGGTGCAGATCCGCTCAAACATACCGTCTTTATCTTGGTCTAAATAATGCAT TAACTGAAGACGGGAAGTTCCTTCTTGCTGCGCGCAAGTGTAGACGCCCCACCTGCACGGATTATATCATTTCTCTAGATACTGATGATATGTCAAAGGG AAGCAATGCTTATGTTGGGAAACTTAGATCCAATTTTCTCGGAACCAAGTTCACGGTCTTTGATGGACAGCCCCCTCATGCTGGAGCCAAGATGACAAAA AGTCGCTCCTCAAGGCTAGTAAATTTGAAACAAGTTTCTCCAAGAGTCCCTACTGGCAATTACCCAGTGGCTAGCATCTCATATGAATTGAATGTATTGG GTTCCAGGGGTCCTAGGAGAATGCATTGCATTATGGATGCCATCCCCGCTTCTGCCATTGAACCTGGTGGAATAGCTCCCACACAGACCGAGTTTTCTCA TCACAATGTAGATTTCTTACCATCACTGCCCTTTTTCCGGTCAAAGTCAAGCCGAGTTGAGAGCTTTCAATCAGGATCCTTGTCCAGTCAGAGAGAACGA GCTTTGGTGCTGAAAAACAAGGCTCCAAGGTGGCATGAACAGCTCCAGTGTTGGTGTTTAAACTTCCATGGACGGGTTACAGTTGCTTCAGTGAAAAACT TTCAGTTGGTTGTTTCCCCAGAAAATGGACCAGCTGGGCCAGAACATGAGAATATCATCCTCCAATTTGGCAAAGTTGGAAAGGATTTGTTTACCATGGA TTACCGCTATCCAATCTCCGCATTCCAAGCATTTGCACTGTGCCTCAGTAGCTTTGACACCAAAATAGCTTGTGAATGA
AA sequence Show only first row Show all	>Potri.008G195200.9 pacid=42807011 polypeptide=Potri.008G195200.9.p locus=Potri.008G195200 ID=Potri.008G195200.9.v4.1 annot-version=v4.1 MSAIKSIINRSRSHRVVQYSSAPDLSLFGGGCGAETTSCWANLPQELLREVLIRIEESESSWPPRKNVVACAGVCRSWRDITKELVKVPELSGKLTFPIS VKQPGPRDFLLQCFIKRCRSAQTYRLYLGLNNALTEDGKFLLAARKCRRPTCTDYIISLDTDDMSKGSNAYVGKLRSNFLGTKFTVFDGQPPHAGAKMTK SRSSRLVNLKQVSPRVPTGNYPVASISYELNVLGSRGPRRMHCIMDAIPASAIEPGGIAPTQTEFSHHNVDFLPSLPFFRSKSSRVESFQSGSLSSQRER ALVLKNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVVSPENGPAGPEHENIILQFGKVGKDLFTMDYRYPISAFQAFALCLSSFDTKIACE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47900	TUB	AtTLP3	tubby like protein 3 (.1.2.3)		Potri.008G195200 [exp]	0	1
AT5G05690		CBB3, DWF3, CYP...	DWARF 3, CYTOCHROME P450 90A1,...		Potri.008G067500 [exp]	5.47	0.8435
AT1G11720		ATSS3	starch synthase 3 (.1.2)		Potri.004G014100 [exp]	5.47	0.8254
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Potri.008G026600 [exp]	6.92	0.8414
AT1G11340			S-locus lectin protein kinase ...		Potri.011G036100 [exp]	9.79	0.8239
AT5G14370			CCT motif family protein (.1)		Potri.001G339200 [exp]	11.83	0.8283
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Potri.009G017400 [exp]	15.42	0.8178
AT5G26570		ATGWD3, OK1, PW...	PHOSPHOGLUCAN WATER DIKINASE, ...		Potri.002G234500 [exp]	18.49	0.8068
AT2G42620		PPS, PP2, ORE9,...	PLEIOTROPIC PHOTOSIGNALING, OR...		Potri.011G066700 [exp]	20.00	0.7713
AT3G14830			unknown protein		Potri.011G106600 [exp]	28.56	0.7750
AT5G61380		AtTOC1, TOC1, A...	PSEUDO-RESPONSE REGULATOR 1, T...		Potri.015G061900 [exp]	30.33	0.8105

Compare expression of checked genes

Potri.008G195200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.