Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07630 504 / 2e-179 AtADT2, ADT2 Arabidopsis thaliana arogenate dehydratase 2, arogenate dehydratase 2 (.1.2) AT1G11790 421 / 2e-146 AtADT1, ADT1 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) AT1G08250 406 / 2e-140 AtADT6, ADT6 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) AT2G27820 401 / 3e-138 ADT3, PD1 arogenate dehydratase 3, prephenate dehydratase 1 (.1) AT3G44720 375 / 4e-128 ADT4 arogenate dehydratase 4 (.1) AT5G22630 363 / 2e-123 ADT5 arogenate dehydratase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G004700 [exp] 441 / 3e-154 AT1G11790 527 / 0.0 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Potri.004G013400 [exp] 430 / 4e-150 AT1G11790 513 / 0.0 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Potri.004G188100 [exp] 411 / 7e-142 AT1G08250 612 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Potri.009G148800 [exp] 411 / 9e-142 AT1G08250 606 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036135 [exp] 488 / 4e-173 AT3G07630 449 / 7e-158 Arabidopsis thaliana arogenate dehydratase 2, arogenate dehydratase 2 (.1.2) Lus10018128 [exp] 486 / 1e-171 AT3G07630 456 / 5e-160 Arabidopsis thaliana arogenate dehydratase 2, arogenate dehydratase 2 (.1.2) Lus10043369 [exp] 410 / 1e-141 AT1G08250 599 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Lus10031547 [exp] 407 / 1e-141 AT1G11790 437 / 3e-153 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Lus10019526 [exp] 410 / 2e-141 AT1G08250 602 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Lus10020549 [exp] 408 / 8e-141 AT1G08250 602 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Lus10009396 [exp] 406 / 3e-140 AT1G08250 607 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Lus10015130 [exp] 403 / 8e-140 AT1G11790 434 / 4e-152 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Lus10015561 [exp] 368 / 6e-126 AT1G11790 437 / 3e-153 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Lus10020035 [exp] 354 / 1e-120 AT1G11790 426 / 5e-149 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0177 [poplar] [flax] PBP PF00800 [poplar] [flax] PDT Prephenate dehydratase
Representative CDS sequence Show only first row Show all	>Potri.008G195500.2 pacid=42806370 polypeptide=Potri.008G195500.2.p locus=Potri.008G195500 ID=Potri.008G195500.2.v4.1 annot-version=v4.1 ATGGCAGCTTTCGTGATAAAATCCCTAGTAAGCCAAATCACCGCTAAACACTCACCGTCTGATCATACGTCATCAAGAATCGAAATCAAATCAGCACTGA TTTCTGTGAAACGGCGCTGCGGTAGCAAAATTCCAGTCTTGGCGGCTTCAATTCACAGTGAAAACGACCAATCAATCGAGGCGCAGAAGAAGAAGAACGG TAATGCTAAAAACATTCAATCTAATCTCTTGCAGGATGCTGAATACGATGTCGCCTCGAAAGACGCCCATCCAAGGCCATTATCATCTTCTCATTTATCA AATTCAGTATCCAATGGGTCTCGCCTTCGCGTTGCTTACCAGGGAGTTCGTGGCGCCTACAGTGAGTCAGCAGCACAAAAGGCGTATCCGAATTGCGAGG CTGTCCCATGCGAGCAATTTGATACTGCTTTTGAATCAGTTGAAAGATGGCTTGTGGACAGAGCAGTTTTACCGATTGAGAATTCGCTAGGTGGGAGCAT TCACAGAAATTATGACCTGTTGCTCCGGCACAGGCTGCATATAGTAGGAGAAGTGAAGTATGCTGTTCGCCATTGCTTACTAGCCAATCATGGTGTTAAA GTTGAAGACTTGAAGAGGGTTCTAAGTCATCCGCAGGCTCTTGCTCAATGTGAAAATACATTAACAAAGTTGGGATTGGTCAGAGAAGCAGTGGATGATA CCGCTGGTGCAGCAAAGCATGTTGCACTTCAAAAACTAGAAGACACGGGAGCTGTTGCTAGTTCTGCTGCTGCGTCGATCTATGGATTGAATATATTAGC TGAAGATATTCAGGATGATTCTGATAATGTCACACGATTCCTTATACTGGCAAGAGAACCAATAATTCCAGGCACAGATAGGCCTTTCAAGACAAGTATA GTTTTTTCATTGGAGGAGGGTCCTGGGGTGCTTTTCAAGGCCCTTGCTGTTTTTGCTCTTCGGCAAATCAACCTTACTAAAATTGAGAGTCGTCCCTTGC GGAAGCAGCCCTTGAGAGCATCTGATGATGGCAACAGTGGGCTTCCAAAATACTTTGACTATCTATTTTATGTGGATTTCGAAGCATCAATGGCTGACGA GAATGCTCAGAATGCCCTCAGGCATCTTAAGGAGTTTGCTACGTTCTTGCGAGTTCTGGGGAGTTATCCGGTGCACACTAGCATGGTGTGA
AA sequence Show only first row Show all	>Potri.008G195500.2 pacid=42806370 polypeptide=Potri.008G195500.2.p locus=Potri.008G195500 ID=Potri.008G195500.2.v4.1 annot-version=v4.1 MAAFVIKSLVSQITAKHSPSDHTSSRIEIKSALISVKRRCGSKIPVLAASIHSENDQSIEAQKKKNGNAKNIQSNLLQDAEYDVASKDAHPRPLSSSHLS NSVSNGSRLRVAYQGVRGAYSESAAQKAYPNCEAVPCEQFDTAFESVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKYAVRHCLLANHGVK VEDLKRVLSHPQALAQCENTLTKLGLVREAVDDTAGAAKHVALQKLEDTGAVASSAAASIYGLNILAEDIQDDSDNVTRFLILAREPIIPGTDRPFKTSI VFSLEEGPGVLFKALAVFALRQINLTKIESRPLRKQPLRASDDGNSGLPKYFDYLFYVDFEASMADENAQNALRHLKEFATFLRVLGSYPVHTSMV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07630		AtADT2, ADT2	Arabidopsis thaliana arogenate...		Potri.008G195500 [exp]	0	1
AT1G22840		CYTC-1, ATCYTC-...	CYTOCHROME C-A, CYTOCHROME C-1...		Potri.019G076101 [exp]	5.47	0.8490
AT5G37475			Translation initiation factor ...		Potri.017G138300 [exp]	8.06	0.7712
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Potri.019G048800 [exp]	9.59	0.8533
AT5G55630		ATTPK1, ATKCO1	TWO PORE K CHANNEL 1, TWO PORE...		Potri.001G366800 [exp]	11.53	0.8122
AT5G16300			Vps51/Vps67 family (components...		Potri.008G079700 [exp]	23.23	0.8073
AT4G31080			Protein of unknown function (D...		Potri.006G281200 [exp]	32.78	0.8329
AT3G24350		ATSYP32, SYP32	syntaxin of plants 32 (.1.2)		Potri.018G072400 [exp]	33.04	0.8388
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.006G000300 [exp]	35.88	0.8082	RAB11.6
AT4G21060			Galactosyltransferase family p...		Potri.016G013300 [exp]	40.98	0.8006
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Potri.008G168100 [exp]	43.47	0.7797	CKI1.3

Compare expression of checked genes

Potri.008G195500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.