Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18700 1832 / 0 RUK, EMB3013 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1) AT1G33940 246 / 9e-71 unknown protein AT1G50240 174 / 9e-44 FU FUSED, Protein kinase family protein with ARM repeat domain (.2) AT2G45490 158 / 1e-42 ATAUR3 ataurora3 (.1) AT1G45160 155 / 5e-38 Protein kinase superfamily protein (.1.2) AT3G61960 151 / 5e-38 Protein kinase superfamily protein (.1.2) AT3G08720 147 / 3e-37 ATPK2, ATPK19, ATS6K2, S6K2 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) AT3G08730 147 / 4e-37 ATS6K1, ATPK6, ATPK1 P70 RIBOSOMAL S6 KINASE, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 6, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 1, protein-serine kinase 1 (.1) AT1G48490 152 / 5e-37 Protein kinase superfamily protein (.1.2.3) AT5G62310 151 / 9e-37 IRE INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G031800 [exp] 2461 / 0 AT5G18700 1791 / 0.0 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1) Potri.019G052500 [exp] 178 / 7e-45 AT1G50240 1606 / 0.0 FUSED, Protein kinase family protein with ARM repeat domain (.2) Potri.002G263000 [exp] 164 / 1e-40 AT1G45160 1162 / 0.0 Protein kinase superfamily protein (.1.2) Potri.016G138400 [exp] 153 / 3e-39 AT3G08720 639 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.006G080500 [exp] 148 / 3e-39 AT2G45490 470 / 2e-169 ataurora3 (.1) Potri.002G181000 [exp] 152 / 1e-37 AT3G61960 592 / 0.0 Protein kinase superfamily protein (.1.2) Potri.015G129200 [exp] 153 / 3e-37 AT5G62310 1359 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.012G127800 [exp] 152 / 6e-37 AT5G62310 1318 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.006G109600 [exp] 145 / 1e-36 AT3G08720 637 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012799 [exp] 1139 / 0 AT5G18700 960 / 0.0 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1) Lus10033979 [exp] 548 / 9e-179 AT5G18700 503 / 4e-162 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1) Lus10039167 [exp] 177 / 3e-45 AT1G50240 952 / 0.0 FUSED, Protein kinase family protein with ARM repeat domain (.2) Lus10013766 [exp] 178 / 9e-45 AT1G50240 1521 / 0.0 FUSED, Protein kinase family protein with ARM repeat domain (.2) Lus10005470 [exp] 161 / 4e-40 AT1G45160 977 / 0.0 Protein kinase superfamily protein (.1.2) Lus10020580 [exp] 145 / 4e-38 AT2G45490 482 / 3e-174 ataurora3 (.1) Lus10027196 [exp] 150 / 3e-36 AT5G62310 1484 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10030182 [exp] 146 / 6e-36 AT3G61960 617 / 0.0 Protein kinase superfamily protein (.1.2) Lus10038912 [exp] 148 / 1e-35 AT5G62310 1483 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10005135 [exp] 143 / 5e-35 AT3G61960 632 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G195800.1 pacid=42805810 polypeptide=Potri.008G195800.1.p locus=Potri.008G195800 ID=Potri.008G195800.1.v4.1 annot-version=v4.1 ATGAACCATTTCCACATCTACGAAGCCATTGGCCGTGGCAAATACTCGAGTGTGTATAAAGGTAGAAAGAAGAAGACGATTGAGTATTTCGCAATTAAGA GTGTTGATAAGTCGCAGAAGAGTAAAGTTCTTCATGAAGTCAGGATGCTTCACTCCTTAGATCATCCAAATGTCTTAAAATTTTACTCATGGTATGAAAC GTCATCTCACCTGTGGTTGGTTTTGGAATATTGTGTTGGTGGAGATCTCATGACCTTATTGCGACAGGATAGTCAGCTGCCTGAAGACTCGATTCATGAT CTCTCCCATGACGTAGTTAGAGCTTTGCAGTACTTACACTCAAAAGGAATTATTTACTGTGATTTAAAACCATCAAACATCCTCTTAGATGAGAATGGAC ACACAAAGCTATGTGATTTTGGATTGGCAAGAAAATTGAGCGATATATCCAAAACTCCTTCATCCATGTTGCCACAAGCAAAACGTGGAACACCCTGTTA TATGGCTCCTGAACTATTTGAGGACGGGGGTGCTCATTCATATGCATCTGACTTTTGGGCCTTAGGCTGTGTACTGTATGAGGGCTATGCAGGGAGGCCT CCTTTTGTGGGAAGAGAATTCACACAGCTAGTGAAATCCATACTCTCAGATCCGACACCCCCCCTCCCTGGCAATCCAAGCCGTCCCTTTGTCAACCTAG TCAATTCTCTCCTCGTAAAAGATCCAGCTGAAAGAATCAAGTGGAGTGAGCTTTGCGGACATGCTTTCTGGAGGACTAAATTTGCTCCGGTGCATTTACC TCCTCAACCAGCTTTTGATAATATGATAGAGCTTTGTGCTAAGCCTTGTCTCTCAGAATGTAACGGAGACAGATCTTTAGCAAATAGGACCCCTCCTAAA CATCGTGAAAAGGATGCAAAAGGGACTCCAAAACAGGATGAGAATTCAATGTTAGGATCAAGAGGTCACGAAACACCAGTTAAAGGTACGCCGACTGGCA GGAAAACTCAAACAAAAGTCTCTGGCAGGGTGGTTGAAGTGAAGCAGAAAGATCCTTCCAGTGCTGCTAGGCATGTTAATCTCTTAAGGCTGTCAAGAAT AGCGAAATCAAACTTACAGAAGGAGAATGAGAAGGAAAACTATAGGAGGCCCTCACCCAATGGCTTTGAGAATGATTCTGAGGTCAAAACAGAAAACACT GATATGGAACTTGATTTTAATGAGAATGCTGAAGATGAGATACATGATGAACCTGATGGGTCAGATAACTCAACCAGTACAACAGAAGAGGTGGTCAATA ACATACCTCAATTGGAAACCTTCCCTGTGATTAACGCACCTGCCTCAGATGAATCACAAACAAATGACCAGGATTCATCTTCAGAGCAGGTTGATATGGT TCCTTCTCCAGTCAGTGCTAGTCCTCAGCTCAGGAATCAGAGAATTAAAGAAGGTTTAGGGTCAGCCATTGAGTTTGACTCTTCAAAATCATCCAATAAC CTTTCACAGGTCCTTTGGCATTCATCTGATCTTTCTGTCAGACCTGTAATGCCCAGTAGAAAAGCTGATAAAGTGTCAGATGTTATTCCCTCTCTTCCAT TTGAGGCCCTGCAACCATCTGATTTTGTAAAGATGTCCAAGGAGCAGCTGGATTCACTCACCAACAGAATCATATGCATTTTAAATGGAAATACTAGCAT CGGGGAGAAGCAGAATGTGATTAGATACCTTGAGATGTTGAGTAGCAATGCTGACACAGCCAATATTCTGACAAATGGGCCAATAATGCTCCTGCTTGTT AAAATGCTTCGGCTGTCCAAGACCTCAGCTTTGCGTGTTCAGCTTGCTTCATTGATTGGATTGTTAATTCGCCATTCAACTTTTATTGAAGATGATTTGG CAAATTCTGGAATTTTGGGCTCACTAACTGATGGCCTCAGAGACAAACAGGAAAAAGTGAGGAGATTTTCCATGGCTGCTTTAGGTGAGTTGCTGTTTTA TATATCTACCCAGAACGATCAGAGCAAGGATAACAATCCACCAGAATCTTCATCAAAGGACAGCCGATCTGCATTTGGCTGGCAGGTTCCAAACTCGTTG ATTTCATTGGTGTCATCTGTTTTGCGTAAAGGAGAGGATGATATAACTCAACTTTATGCATTGAGGACAATTGAAAACATCTGCAGTCAAGGGGGGCACT GGGCAGGTCGCTTCACTAGCCAGGATGTGATTAGTAACATCTGTTATATATATAGAGCTGCAGGGAAACAGGAGAGCATCAGGCTGACTGCAGGTTCATG TTTAGTCCGGCTGGCAAGATTCAACCCTCCTAGCATTCAATCAGTCATGGAGAAACTGTCTTTCAAGGACACAGTGTCTGCCCTTGGCAAGGGCAGCCCA CGTGAGCAGCAAATAAGTTTGAACCTCTTAAACATGGCTATGCTTGGAAGTCATATGTTTACAAACATTGGGCGGCACCTTTCGAACTTGGCAGAGGATA AGAATTTGGTCCCAAGTCTCGTGTCTCTTACTGAGCAGGGTGGTGAAATTTTGAGGGGAAAGGCACTCCTTCTCATTGCTCTTCTTTGTAAAAACGGTAG GAGGTGGCTTTCACACTTTTTTTGCAACCCTAGGTTACTATCTGCAGTGGATAGGCTAGCAAAAGAGAAGGATATCTATCTCCAACAATGTCTAGATGCA TTTGTGCATGTTGTGGCATCTACTATACCAAGTTTACTGGATATTATAGCCGGAGATATTCAGCAAATGATGGGAGGAAGGCGTCAGGGTCATATCTCTG CCATTGCGCATCGAATTGCTCCAAAAACCAATGTTCATATGTTTCCTGTTGTTCTTCATCTTCTTGGAAGTTCTTCTTTTAAGCTGAAGGTGGTGAACCA TCAAGTTATGCAGCAGTTGGCAAATTTGGTCAAAGTCTTGGAGACACCATTTCCGGGAAGAGATGACTTCCAAATAACCCTTCTTCGAGTTCTTGAATCT GTTGCTGAGGAGCGTCTTGTAATTCTTGAAAGCCCCAACATTTTCATTGGTGAAATCCTTCCTGGTCTAGCTGTTCTGTACAAGGGCAACAAGGATGGTG ATGCCAGATTTTTATGCCTAAAAATTTTGTTTGATGTGATGGTCATTTTCTTGAATGAACCTTTGGAAGATGAGAAAGGATCAGAGGCTTTAAAGTCCAT ATCCAATATTCATTTCCTACCTCTCTACCCTACCTTTATTGAAGATGAAGATCCCATTCCCATGTATGCGCAGAAGCTCCTTGTGATGCTCATTGAGTAC GATTACATAAAAATTTCAGACATTCTACATCTGAAGACAGTTTCACAGTGCTTTGAATTTTTGCTTGGTGACCTATCAAGTGCTAATGTCAATAATGTTC AGCTGTGTCTGGCTATGGCATCAGCTCCTGAAATGGAATCTAAGTTGCTTTCTCAATTAAAAGTGGTGAGGCGGATTGGAAACCTTTTAGAGTTTGTGTG TGCAAAGGACATGGAAGACTTTCTTGAGCCAACTCTTGGCTTGTGTAGGGCATTCCTTCTATGTTCGGTTGGCGGTAAAAGAGGACTTGCGTACAAAAAA GAGCCAGCACTTCTAAATGATTCTTCCTATGAGGCAAGCACTGCAGCTGATCAACTGCAATGCATAAGAGATATAACGGACTTTGGTAGCAATGTAGGTG TTCTGCTGGTGTTGAGTGGGTCCGATGAAGCAAACGTTGCAGATATAGCTTCCGAATGCGTGTTGTTGGTGCTGAAGGCAGCTCCAAGGGAAGCCACTAC TGGTTTTCTAACTAACCTTCCGAAGGTTAGTGCAATCCTCGAGTCTTGGCGCAAGGGTGTTCCTCACTTACTCTTGCAGCGGATACTGCATGCTCTTGCT TATTCTTGTCGGCAATATTTGTCGCATGCGATGATACTATCCATCCCTGTAAATGAGATTTCAAGGATTGAAGTCATTCTCTTGGAGCTGAAAAAATCAA GCAACCCTGATTTAGCTAATGCTGCTTTGCTTGTGGTCTCAGAGTTGCAGCGCCTACATCGTTGCATTTGA
AA sequence Show only first row Show all	>Potri.008G195800.1 pacid=42805810 polypeptide=Potri.008G195800.1.p locus=Potri.008G195800 ID=Potri.008G195800.1.v4.1 annot-version=v4.1 MNHFHIYEAIGRGKYSSVYKGRKKKTIEYFAIKSVDKSQKSKVLHEVRMLHSLDHPNVLKFYSWYETSSHLWLVLEYCVGGDLMTLLRQDSQLPEDSIHD LSHDVVRALQYLHSKGIIYCDLKPSNILLDENGHTKLCDFGLARKLSDISKTPSSMLPQAKRGTPCYMAPELFEDGGAHSYASDFWALGCVLYEGYAGRP PFVGREFTQLVKSILSDPTPPLPGNPSRPFVNLVNSLLVKDPAERIKWSELCGHAFWRTKFAPVHLPPQPAFDNMIELCAKPCLSECNGDRSLANRTPPK HREKDAKGTPKQDENSMLGSRGHETPVKGTPTGRKTQTKVSGRVVEVKQKDPSSAARHVNLLRLSRIAKSNLQKENEKENYRRPSPNGFENDSEVKTENT DMELDFNENAEDEIHDEPDGSDNSTSTTEEVVNNIPQLETFPVINAPASDESQTNDQDSSSEQVDMVPSPVSASPQLRNQRIKEGLGSAIEFDSSKSSNN LSQVLWHSSDLSVRPVMPSRKADKVSDVIPSLPFEALQPSDFVKMSKEQLDSLTNRIICILNGNTSIGEKQNVIRYLEMLSSNADTANILTNGPIMLLLV KMLRLSKTSALRVQLASLIGLLIRHSTFIEDDLANSGILGSLTDGLRDKQEKVRRFSMAALGELLFYISTQNDQSKDNNPPESSSKDSRSAFGWQVPNSL ISLVSSVLRKGEDDITQLYALRTIENICSQGGHWAGRFTSQDVISNICYIYRAAGKQESIRLTAGSCLVRLARFNPPSIQSVMEKLSFKDTVSALGKGSP REQQISLNLLNMAMLGSHMFTNIGRHLSNLAEDKNLVPSLVSLTEQGGEILRGKALLLIALLCKNGRRWLSHFFCNPRLLSAVDRLAKEKDIYLQQCLDA FVHVVASTIPSLLDIIAGDIQQMMGGRRQGHISAIAHRIAPKTNVHMFPVVLHLLGSSSFKLKVVNHQVMQQLANLVKVLETPFPGRDDFQITLLRVLES VAEERLVILESPNIFIGEILPGLAVLYKGNKDGDARFLCLKILFDVMVIFLNEPLEDEKGSEALKSISNIHFLPLYPTFIEDEDPIPMYAQKLLVMLIEY DYIKISDILHLKTVSQCFEFLLGDLSSANVNNVQLCLAMASAPEMESKLLSQLKVVRRIGNLLEFVCAKDMEDFLEPTLGLCRAFLLCSVGGKRGLAYKK EPALLNDSSYEASTAADQLQCIRDITDFGSNVGVLLVLSGSDEANVADIASECVLLVLKAAPREATTGFLTNLPKVSAILESWRKGVPHLLLQRILHALA YSCRQYLSHAMILSIPVNEISRIEVILLELKKSSNPDLANAALLVVSELQRLHRCI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18700		RUK, EMB3013	RUNKEL, EMBRYO DEFECTIVE 3013,...		Potri.008G195800 [exp]	0	1
AT5G04990		ATSUN1	ARABIDOPSIS SAD1/UNC-84 DOMAIN...		Potri.008G010900 [exp]	1.73	0.9587
AT1G49870			unknown protein		Potri.009G090900 [exp]	3.16	0.9629
AT1G63100	GRAS		GRAS family transcription fact...		Potri.001G109400 [exp]	3.74	0.9507
AT5G03870			Glutaredoxin family protein (....		Potri.006G212700 [exp]	5.47	0.9625
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Potri.011G131500 [exp]	6.70	0.9561
AT1G49870			unknown protein		Potri.001G296700 [exp]	7.93	0.9259
AT4G14330			P-loop containing nucleoside t...		Potri.008G169000 [exp]	9.16	0.9573
AT3G15550			unknown protein		Potri.003G058600 [exp]	9.48	0.9528
AT5G01420			Glutaredoxin family protein (....		Potri.008G016100 [exp]	10.58	0.9470
AT4G14490	FHA		SMAD/FHA domain-containing pro...		Potri.010G074900 [exp]	13.30	0.9058

Compare expression of checked genes

Potri.008G195800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.